Timeline



Sep 9, 2022:

2:01 PM Changeset [6847] by Nicklas Nordborg
Changes for future release Reggie 4.41
1:59 PM Milestone Reggie v4.40 completed
See Reggie extension page for more information.
1:59 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.40 (diff)
1:57 PM reggie-4.40.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.40
1:55 PM Changeset [6846] by Nicklas Nordborg
Tagging Reggie 4.40
1:55 PM Changeset [6845] by Nicklas Nordborg
Preparing to release Reggie 4.40
1:54 PM Tickets #1402,​1404 batch updated by Nicklas Nordborg
fixed
11:57 AM Changeset [6844] by Nicklas Nordborg
Changes for future release Job scheduler extension 1.8
11:56 AM Milestone Job scheduler extension v1.7 completed
See the Job scheduler extension page for …
11:56 AM net.sf.basedb.opengrid edited by Nicklas Nordborg
Released Job scheduler extension 1.7 (diff)
11:53 AM opengrid-1.7.tar.gz attached to net.sf.basedb.opengrid by Nicklas Nordborg
Job scheduler 1.7
11:51 AM Changeset [6843] by Nicklas Nordborg
Tagging Job scheduler extension 1.7
11:51 AM Changeset [6842] by Nicklas Nordborg
Preparing to release Job scheduler extension 1.7
9:52 AM net.sf.basedb.opengrid/install edited by Nicklas Nordborg
(diff)
9:51 AM net.sf.basedb.opengrid/install edited by Nicklas Nordborg
Documenting the new <slurm-accounting-disabled> options introduced in … (diff)
9:41 AM net.sf.basedb.reggie/notes440 created by Nicklas Nordborg
Started to write update instructions for Reggie 4.40
9:11 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Added an entry for upcoming Reggie 4.40 so that we can prepare release … (diff)
9:01 AM Ticket #1410 (Problem with "Reggie was updated..." log entries) closed by Nicklas Nordborg
fixed
8:34 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6841: […]
8:34 AM Changeset [6841] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline The legacy …
7:41 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6840: […]
7:41 AM Changeset [6840] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline The new …

Sep 8, 2022:

4:01 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6839: […]
4:01 PM Changeset [6839] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Added …
3:59 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6838: […]
3:59 PM Changeset [6838] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline The GTF …

Sep 5, 2022:

1:27 PM Ticket #1408 (Add support for using Slurm without accounting enabled) closed by Nicklas Nordborg
fixed
1:27 PM Ticket #1408 (Add support for using Slurm without accounting enabled) updated by Nicklas Nordborg
In [6831]: Fixes an issue with cancelling jobs and trapping the …
1:27 PM Ticket #1408 (Add support for using Slurm without accounting enabled) updated by Nicklas Nordborg
In [6830]: Sometimes there is an extra request for status information …
1:26 PM Ticket #1408 (Add support for using Slurm without accounting enabled) updated by Nicklas Nordborg
In [6829]: A status file is now created if the accounting has been …
1:25 PM Ticket #1408 (Add support for using Slurm without accounting enabled) updated by Nicklas Nordborg
In [6827]: Added support for setting custom options for <cluster>
1:24 PM Ticket #1408 (Add support for using Slurm without accounting enabled) updated by Nicklas Nordborg
Accidentally checked in with references to ticket number #14078
12:48 PM Ticket #1411 (Avoid inlining of the Reggie.VERSION constant) closed by Nicklas Nordborg
fixed: In 6837: […]
12:48 PM Changeset [6837] by Nicklas Nordborg
Fixes #1411: Avoid inlining of the Reggie.VERSION constant Call …
11:49 AM Ticket #1411 (Avoid inlining of the Reggie.VERSION constant) created by Nicklas Nordborg
An constant string expression (like Reggie.VERSION) is copied by …
11:23 AM Ticket #1410 (Problem with "Reggie was updated..." log entries) updated by Nicklas Nordborg
In 6836: […]
11:23 AM Changeset [6836] by Nicklas Nordborg
References #1410: Problem with "Reggie was updated..." log entries …
11:17 AM Ticket #1410 (Problem with "Reggie was updated..." log entries) created by Nicklas Nordborg
The functionality that was implemented in #1391 that makes it possible …
8:36 AM Changeset [6835] by Nicklas Nordborg
Merge Reggie 4.39.2 to the trunk.
8:32 AM Milestone Reggie v4.39.2 completed
Bug fixes and enhancements for Reggie 4.39.1. Revision Log: …
8:32 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.39.2 (diff)
8:31 AM reggie-4.39.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.39.2
8:29 AM Changeset [6834] by Nicklas Nordborg
Tagging Reggie 4.39.2
8:29 AM Changeset [6833] by Nicklas Nordborg
Preparing to release Reggie 4.39.2
7:44 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6832: […]
7:44 AM Changeset [6832] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Fixed some …

Sep 2, 2022:

3:55 PM Changeset [6831] by Nicklas Nordborg
References #14078: Add support for using Slurm without accounting …
2:40 PM Changeset [6830] by Nicklas Nordborg
References #14078: Add support for using Slurm without accounting …

Sep 1, 2022:

1:39 PM Changeset [6829] by Nicklas Nordborg
References #14078: Add support for using Slurm without accounting …
8:48 AM Ticket #1409 (Find case by searching the BD47_ID annotation) closed by Nicklas Nordborg
fixed: In 6828: […]
8:48 AM Changeset [6828] by Nicklas Nordborg
Fixes #1409: Find case by searching the BD47_ID annotation

Aug 31, 2022:

2:18 PM Ticket #1409 (Find case by searching the BD47_ID annotation) created by Nicklas Nordborg
The value of this annotation is typically a SCAN-B ID with an optional …
1:09 PM Changeset [6827] by Nicklas Nordborg
References #14078: Add support for using Slurm without accounting …
11:12 AM Ticket #1406 (Problems with TMPDIR in slurm) closed by Nicklas Nordborg
fixed: In 6826: […]
11:12 AM Changeset [6826] by Nicklas Nordborg
Fixes #1406: Problems with TMPDIR in slurm Solved by setting a …
9:49 AM Ticket #1408 (Add support for using Slurm without accounting enabled) updated by Nicklas Nordborg
Description changed
9:46 AM Ticket #1408 (Add support for using Slurm without accounting enabled) created by Nicklas Nordborg
The current implementation of the Slurm engine uses the sacct
9:35 AM Ticket #1407 (The auto-generated job names use 12-hour time format) closed by Nicklas Nordborg
fixed: In 6825: […]
9:35 AM Changeset [6825] by Nicklas Nordborg
Fixes #1407: The auto-generated job names use 12-hour time format Use …
9:34 AM Ticket #1407 (The auto-generated job names use 12-hour time format) created by Nicklas Nordborg
The auto-generated names for jobs include the date and time to make …
9:12 AM Ticket #1406 (Problems with TMPDIR in slurm) created by Nicklas Nordborg
The fix in #1389 may cause problems when running jobs in a slurm …

Aug 30, 2022:

11:07 AM Ticket #1405 (Get rid of code using the window.event object) closed by Nicklas Nordborg
fixed: In 6824: […]
11:07 AM Changeset [6824] by Nicklas Nordborg
Fixes #1405: Get rid of code using the window.event object I found a …

Aug 29, 2022:

1:20 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6823: […]
1:20 PM Changeset [6823] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline …
1:05 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6822: […]
1:05 PM Changeset [6822] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Added …
11:11 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6821: […]
11:11 AM Changeset [6821] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Starting …
10:01 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6820: […]
10:01 AM Changeset [6820] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Added a …

Aug 26, 2022:

2:33 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6819: […]
2:33 PM Changeset [6819] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Array …
1:58 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6818: […]
1:58 PM Changeset [6818] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Started to …
12:59 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6817: […]
12:59 PM Changeset [6817] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline New …
11:14 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6816: […]
11:14 AM Changeset [6816] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Partial …
10:22 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6815: […]
10:22 AM Changeset [6815] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline …
7:36 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6814: […]
7:36 AM Changeset [6814] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline …

Aug 25, 2022:

1:18 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6813: […]
1:17 PM Changeset [6813] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Started to …
10:58 AM Ticket #1405 (Get rid of code using the window.event object) created by Nicklas Nordborg
I found an event handler that didn't define a parameter for the event …
9:23 AM Ticket #1404 (Use the Pipeline annotation on software and protocol items instead of ...) updated by Nicklas Nordborg
In 6812: […]
9:23 AM Changeset [6812] by Nicklas Nordborg
References #1404: Use the Pipeline annotation on software and protocol …
8:37 AM Ticket #1404 (Use the Pipeline annotation on software and protocol items instead of ...) created by Nicklas Nordborg
Protocols and software items currently use various *Type annotations …
8:32 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6811: […]
8:32 AM Changeset [6811] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Renamed …

Aug 24, 2022:

2:16 PM net.sf.basedb.meludi edited by olle
Update related to release of MeLuDI 1.6.0 (diff)
2:13 PM meludi-1.6.0.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI 1.6.0
2:06 PM net.sf.basedb.meludi edited by olle
Update related to release of MeLuDI 1.6.0 (diff)
1:42 PM Milestone MeLuDI v1.6.0 completed
Updates of the MeLuDI extension to BASE, a package of registration …
1:41 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) closed by olle
fixed: Ticket closed as multiple project support to MeLuDI has been added, …
1:21 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [6810]) Refs #1029. Update of installation information file …
1:14 PM Ticket #911 (MeLuDI should support multiple projects) updated by olle
1:14 PM Changeset [6810] by olle
Refs #911. Update of installation information file "readme.txt". …
1:11 PM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6809: […]
1:11 PM Changeset [6809] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Modified …
1:07 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Description changed
Ticket description updated by including support for projects …
11:59 AM Changeset [6808] by olle
11:37 AM net.sf.basedb.meludi.notes1_6_0 edited by olle
Updated section on MeLuDI configuration file (diff)
11:16 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6807: […]
11:16 AM Changeset [6807] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Created a …
9:58 AM net.sf.basedb.meludi.notes1_6_0 edited by olle
Updated section on MeLuDI configuration file (diff)
9:52 AM net.sf.basedb.meludi.notes1_6_0 edited by olle
Updated section on MeLuDI configuration file (diff)
9:45 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
Status, Milestone changed
9:36 AM Ticket #1402 (Implement a new Hisat/Stringtie pipeline) updated by Nicklas Nordborg
In 6806: […]
9:36 AM Changeset [6806] by Nicklas Nordborg
References #1402: Implement a new Hisat/Stringtie pipeline Added a …
9:07 AM net.sf.basedb.meludi.notes1_6_0 edited by olle
Updated section on MeLuDI configuration file (diff)
9:06 AM net.sf.basedb.meludi.notes1_6_0 edited by olle
Updated section on MeLuDI configuration file (diff)
8:42 AM net.sf.basedb.meludi.notes1_6_0 edited by olle
Updated section on MeLuDI configuration file (diff)
7:56 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 6805: […]
7:56 AM Changeset [6805] by olle
Refs #1029. Updates due to version number change to "1.6.0". 1. …

Aug 23, 2022:

4:33 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 6804: […]
4:33 PM Changeset [6804] by olle
Refs #1029. MeLuDI updated to prepare for creating referral forms for …
4:13 PM net.sf.basedb.meludi.notes1_6_0 created by olle
Added wiki net.sf.basedb.meludi.notes1_6_0
3:01 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 6803: […]
3:01 PM Changeset [6803] by olle
Refs #1029. MeLuDI updated to prepare for creating referral forms for …
2:45 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 6802: […]
2:45 PM Changeset [6802] by olle
Refs #1029. MeLuDI updated to prepare for creating referral forms for …

Aug 15, 2022:

8:56 AM net.sf.basedb.webauthn/using edited by Nicklas Nordborg
(diff)
8:50 AM enter-pin.png attached to net.sf.basedb.webauthn/using by Nicklas Nordborg
Enter PIN
8:49 AM password-less-login.png attached to net.sf.basedb.webauthn/using by Nicklas Nordborg
Password-less login form
8:49 AM net.sf.basedb.webauthn/using edited by Nicklas Nordborg
Login instructions for password-less login (diff)
8:31 AM net.sf.basedb.webauthn/install edited by Nicklas Nordborg
(diff)

Aug 11, 2022:

7:53 AM Ticket #1403 (Changes Reggie 4.37.2 was never merged to the trunk) closed by Nicklas Nordborg
fixed
7:50 AM Milestone Reggie v4.39.1 completed
Bug fixes and enhancements for Reggie 4.39. Revision Log: …
7:50 AM reggie-4.39.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.39.1
7:47 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.39.1 (diff)
7:43 AM Changeset [6801] by Nicklas Nordborg
Merged Reggie 4.39.1 to the trunk
7:39 AM Changeset [6800] by Nicklas Nordborg
Tagging Reggie 4.39.1
7:38 AM Changeset [6799] by Nicklas Nordborg
Preparing to release Reggie 4.39.1
7:38 AM Ticket #1403 (Changes Reggie 4.37.2 was never merged to the trunk) updated by Nicklas Nordborg
In 6798: […]
7:38 AM Changeset [6798] by Nicklas Nordborg
References #1403: Changes Reggie 4.37.2 was never merged to the trunk …
7:35 AM Ticket #1403 (Changes Reggie 4.37.2 was never merged to the trunk) updated by Nicklas Nordborg
In 6797: […]
7:35 AM Changeset [6797] by Nicklas Nordborg
References #1403: Changes Reggie 4.37.2 was never merged to the trunk …
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