Timeline



Mar 27, 2020:

11:33 AM Ticket #1232 (Add support for external sequencing) updated by Nicklas Nordborg
In 5884: […]
11:33 AM Changeset [5884] by Nicklas Nordborg
References #1232: Add support for external sequencing Added two "pool …

Mar 26, 2020:

9:10 AM Ticket #1232 (Add support for external sequencing) updated by Nicklas Nordborg
In 5883: […]
9:10 AM Changeset [5883] by Nicklas Nordborg
References #1232: Add support for external sequencing Removed …
8:02 AM Ticket #1232 (Add support for external sequencing) updated by Nicklas Nordborg
In 5882: […]
8:02 AM Changeset [5882] by Nicklas Nordborg
References #1232: Add support for external sequencing Removed …

Mar 25, 2020:

1:25 PM Ticket #1232 (Add support for external sequencing) updated by Nicklas Nordborg
In 5881: […]
1:25 PM Changeset [5881] by Nicklas Nordborg
References #1232: Add support for external sequencing Started to …
10:00 AM Ticket #1234 (Implement batch importer for followup blood samples) created by Nicklas Nordborg
Handling of follow up blood has been moved to an external entity. …
9:30 AM Ticket #1200 (Release exporter changes due to Variant calling pipeline) closed by Nicklas Nordborg
fixed
9:30 AM Ticket #1200 (Release exporter changes due to Variant calling pipeline) updated by Nicklas Nordborg
In 5880: […]
9:30 AM Changeset [5880] by Nicklas Nordborg
References #1200: Release exporter changes due to Variant calling …
8:04 AM Ticket #1200 (Release exporter changes due to Variant calling pipeline) updated by Nicklas Nordborg
Description changed
8:00 AM Ticket #1229 (Import some variants as annotations) closed by Nicklas Nordborg
fixed
8:00 AM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
In 5879: […]
8:00 AM Changeset [5879] by Nicklas Nordborg
References #1229: Import some variants as annotations Only commit for …

Mar 24, 2020:

2:37 PM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
In 5878: […]
2:37 PM Changeset [5878] by Nicklas Nordborg
References #1229: Import some variants as annotations Use the …
1:46 PM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
In 5877: […]
1:46 PM Changeset [5877] by Nicklas Nordborg
References #1229: Import some variants as annotations Added a wizard …
8:59 AM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
In 5876: […]
8:59 AM Changeset [5876] by Nicklas Nordborg
References #1229: Import some variants as annotations Added a …
7:40 AM Ticket #1200 (Release exporter changes due to Variant calling pipeline) updated by Nicklas Nordborg
In 5875: […]
7:40 AM Changeset [5875] by Nicklas Nordborg
References #1200: Release exporter changes due to Variant calling …

Mar 23, 2020:

2:23 PM Ticket #1233 (Add support for importing relase data with variant calling) closed by Nicklas Nordborg
fixed
2:23 PM Ticket #1233 (Add support for importing relase data with variant calling) updated by Nicklas Nordborg
In 5874: […]
2:23 PM Changeset [5874] by Nicklas Nordborg
References #1233: Add support for importing relase data with variant …
1:10 PM Ticket #1233 (Add support for importing relase data with variant calling) created by Nicklas Nordborg
We need to add some more pre-defined data types in the installation …
11:49 AM Ticket #1200 (Release exporter changes due to Variant calling pipeline) updated by Nicklas Nordborg
In 5873: […]
11:49 AM Changeset [5873] by Nicklas Nordborg
References #1200: Release exporter changes due to Variant calling …
9:20 AM Ticket #1200 (Release exporter changes due to Variant calling pipeline) updated by Nicklas Nordborg
Description, Milestone changed
9:12 AM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
In 5872: […]
9:12 AM Changeset [5872] by Nicklas Nordborg
References #1229: Import some variants as annotations All variants …

Mar 20, 2020:

11:17 AM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5871: […]
11:17 AM Changeset [5871] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Fixes to …
8:39 AM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5870: […]
8:39 AM Changeset [5870] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Added …

Mar 19, 2020:

9:54 AM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5869: […]
9:54 AM Changeset [5869] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Fixed …

Mar 18, 2020:

12:47 PM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5868: […]
12:47 PM Changeset [5868] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Implemented …
11:44 AM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5867: […]
11:44 AM Changeset [5867] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Started to …

Mar 13, 2020:

9:05 AM Ticket #1232 (Add support for external sequencing) updated by Nicklas Nordborg
Status changed
9:04 AM Ticket #1232 (Add support for external sequencing) created by Nicklas Nordborg
This is related to the support for NovaSeq sequencing (see #1231). …
8:50 AM Tickets #1229,​1231 batch updated by Nicklas Nordborg
Status changed
8:48 AM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5866: […]
8:48 AM Changeset [5866] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq The regular …

Mar 12, 2020:

1:51 PM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5865: […]
1:51 PM Changeset [5865] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Demuxing …
8:56 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5864: […]
8:56 AM Changeset [5864] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
8:48 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5863: […]
8:48 AM Changeset [5863] by olle
Refs #1029. Updates due to version number change to "1.6.0b8". 1. …

Mar 11, 2020:

11:05 AM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5862: […]
11:05 AM Changeset [5862] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Fixes some …
8:07 AM Changeset [5861] by Nicklas Nordborg
Merged fixes in Reggie 4.25.1 to the trunk.
8:04 AM Milestone Reggie v4.25.1 completed
Bug fixes and enhancements for Reggie 4.25. Revision Log: …
8:03 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.25.1 (diff)
8:02 AM reggie-4.25.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.25.1
8:00 AM Changeset [5860] by Nicklas Nordborg
Tagging Reggie 4.25.1
7:59 AM Changeset [5859] by Nicklas Nordborg
Preparing to release Reggie 4.25.1

Mar 10, 2020:

8:16 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5858: […]
8:16 AM Changeset [5858] by olle
Refs #1029. DNA/RNA extraction wizards "Lab tracking protocol for FFPE …
8:12 AM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5857: […]
8:12 AM Changeset [5857] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq The …

Mar 9, 2020:

2:17 PM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5856: […]
2:17 PM Changeset [5856] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Added …
2:11 PM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5855: […]
2:11 PM Changeset [5855] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Added …
2:03 PM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
Summary changed
11:27 AM Ticket #1231 (Add support for sequencing with NovaSeq) created by Nicklas Nordborg
Sequencing with a NovaSeq is similar to the sequencing with NextSeq …

Mar 6, 2020:

3:38 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5854: […]
3:38 PM Changeset [5854] by olle
Refs #1029. FFPE section order form generation updated have bar code …
2:57 PM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
Description changed
2:55 PM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
Description changed
1:44 PM Ticket #1230 (NullPointerException in the "Map external data" wizard) closed by Nicklas Nordborg
fixed: In 5853: […]
1:44 PM Changeset [5853] by Nicklas Nordborg
Fixes #1230: NullPointerException in the "Map external data" wizard …
1:14 PM Ticket #1230 (NullPointerException in the "Map external data" wizard) created by Nicklas Nordborg
Stacktrace […] It seems to be triggered when re-mapping from a …
11:04 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5852: […]
11:04 AM Changeset [5852] by olle
Refs #1029. DNA/RNA extraction wizards "Lab tracking protocol for FFPE …

Mar 4, 2020:

2:21 PM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
Description changed
2:19 PM Ticket #1229 (Import some variants as annotations) created by Nicklas Nordborg
If we find one or more variants in a sample that belongs to a …
8:28 AM Ticket #1228 (Add file actions for viewing genotype and variant information) updated by Nicklas Nordborg
In 5851: […]
8:28 AM Changeset [5851] by Nicklas Nordborg
References #1228: Add file actions for viewing genotype and variant …
8:26 AM Ticket #1228 (Add file actions for viewing genotype and variant information) closed by Nicklas Nordborg
fixed: In 5850: […]
8:26 AM Changeset [5850] by Nicklas Nordborg
Fixes #1228: Add file actions for viewing genotype and variant …

Mar 3, 2020:

1:31 PM Ticket #1227 (Switch to BASE 3.16) closed by Nicklas Nordborg
fixed: In 5849: […]
1:31 PM Changeset [5849] by Nicklas Nordborg
Fixes #1227: Switch to BASE 3.16
9:02 AM Ticket #1228 (Add file actions for viewing genotype and variant information) created by Nicklas Nordborg
BASE 3.16 now has support for "file viewer actions" …
9:00 AM Ticket #1227 (Switch to BASE 3.16) created by Nicklas Nordborg

Mar 2, 2020:

8:45 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5848: […]
8:45 AM Changeset [5848] by olle
Refs #1029. New wizard for FFPE section (specimen) tumour cell …

Feb 27, 2020:

9:34 AM Ticket #1226 (More thread deadlocks) closed by Nicklas Nordborg
fixed: In 5847: […]
9:34 AM Changeset [5847] by Nicklas Nordborg
Fixes #1226: More thread deadlocks I hope this can fix the deadlock.
9:26 AM Ticket #1226 (More thread deadlocks) created by Nicklas Nordborg
I got another thread deadlock similar to #1203. It is still in the …

Feb 26, 2020:

2:44 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5846: […]
2:44 PM Changeset [5846] by Nicklas Nordborg
References #1218: Implement MIPs alignment Fixed some comments.
2:27 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5845: […]
2:27 PM Changeset [5845] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added manual confirmation …
8:37 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5844: […]
8:37 AM Changeset [5844] by Nicklas Nordborg
References #1218: Implement MIPs alignment Adding JSP and javascript …
Note: See TracTimeline for information about the timeline view.