Timeline



Apr 13, 2018:

2:03 PM Ticket #1036 (Add support for public/private key authentication) updated by Nicklas Nordborg
(In [4748]) References #1036: Add support for public/private key …
2:03 PM Changeset [4748] by Nicklas Nordborg
References #1036: Add support for public/private key authentication …
1:46 PM net.sf.basedb.opengrid/install edited by Nicklas Nordborg
References #1036. Documented the new configuration options for using … (diff)
11:26 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4747]) References #1022: INCA import/statistics wizards changes …
11:26 AM Changeset [4747] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
9:18 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4746]) References #1022: INCA import/statistics wizards changes …
9:18 AM Changeset [4746] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …

Apr 10, 2018:

3:29 PM Ticket #1025 (Release exporter should support StringTie data) updated by Nicklas Nordborg
(In [4745]) References #1025: Release exporter should support …
3:29 PM Changeset [4745] by Nicklas Nordborg
References #1025: Release exporter should support StringTie data …
1:08 PM Ticket #1034 (Remove expression matrix from release exporter) updated by Nicklas Nordborg
(In [4744]) References #1034: Remove expression matrix from release …
1:08 PM Changeset [4744] by Nicklas Nordborg
References #1034: Remove expression matrix from release exporter …
1:06 PM Tickets #1025,​1034 batch updated by Nicklas Nordborg
(In [4743]) References #1025 and #1034. Removed check that all raw …
1:06 PM Changeset [4743] by Nicklas Nordborg
References #1025 and #1034. Removed check that all raw bioassays must …
8:58 AM Ticket #1038 (Add support for SSH connections with private key authentication) updated by Nicklas Nordborg
Description changed
8:57 AM Ticket #1038 (Add support for SSH connections with private key authentication) created by Nicklas Nordborg
Implemented in BASE: http://base.thep.lu.se/ticket/2112 We need to …

Apr 9, 2018:

11:35 AM Ticket #1036 (Add support for public/private key authentication) updated by Nicklas Nordborg
(In [4742]) References #1036: Add support for public/private key …
11:35 AM Changeset [4742] by Nicklas Nordborg
References #1036: Add support for public/private key authentication …
9:25 AM Ticket #1036 (Add support for public/private key authentication) updated by Nicklas Nordborg
(In [4741]) References #1036: Add support for public/private key …
9:25 AM Changeset [4741] by Nicklas Nordborg
References #1036: Add support for public/private key authentication …
8:25 AM Ticket #1037 (Depend on BASE 3.13) updated by Nicklas Nordborg
(In [4740]) References #1037: Depend on BASE 3.13 Updated to BASE …
8:25 AM Changeset [4740] by Nicklas Nordborg
References #1037: Depend on BASE 3.13 Updated to BASE 3.13 and …

Apr 6, 2018:

1:20 PM Ticket #1037 (Depend on BASE 3.13) reopened by Nicklas Nordborg
10:38 AM Ticket #1036 (Add support for public/private key authentication) updated by Nicklas Nordborg
I got this to work when using PuTTY key files, but there is a problem …

Apr 5, 2018:

12:44 PM Ticket #1037 (Depend on BASE 3.13) closed by Nicklas Nordborg
fixed: (In [4739]) Fixes #1037: Depend on BASE 3.12
12:44 PM Changeset [4739] by Nicklas Nordborg
Fixes #1037: Depend on BASE 3.12
12:41 PM Ticket #1037 (Depend on BASE 3.13) created by Nicklas Nordborg
Since we are making big changes, it is better to use the latest BASE …
12:38 PM Ticket #1035 (Upgrade SSHj library) updated by Nicklas Nordborg
(In [4738]) References #1035: Upgrade SSHj library
12:38 PM Changeset [4738] by Nicklas Nordborg
References #1035: Upgrade SSHj library
11:37 AM Ticket #1028 (Add support for StringTie data) updated by Nicklas Nordborg
(In [4737]) References #1028: Add support for StringTie data The …
11:37 AM Changeset [4737] by Nicklas Nordborg
References #1028: Add support for StringTie data The Level 3 exporter …
11:33 AM Ticket #1036 (Add support for public/private key authentication) created by Nicklas Nordborg
Instead of a username/password, it would be nice to be able to use …
11:32 AM Ticket #1035 (Upgrade SSHj library) created by Nicklas Nordborg
Latest version is 0.23.0. https://github.com/hierynomus/sshj
11:20 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4736]) Refs #1029. Updates due to version number change to …
11:20 AM Changeset [4736] by olle
Refs #1029. Updates due to version number change to "1.6.0a1". 1. …
9:32 AM Ticket #1028 (Add support for StringTie data) updated by Nicklas Nordborg
(In [4735]) References #1028: Add support for StringTie data The …
9:32 AM Changeset [4735] by Nicklas Nordborg
References #1028: Add support for StringTie data The Relax …
8:55 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4734]) Refs #1029. Case/sample registration in SCAN-B-rec project …
8:55 AM Changeset [4734] by olle
Refs #1029. Case/sample registration in SCAN-B-rec project updated for …
8:24 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4733]) Refs #1029. Code fork introduced for case/sample …
8:24 AM Changeset [4733] by olle
Refs #1029. Code fork introduced for case/sample registration in …
7:30 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Summary of changes to MeLuDI so far: (To be added later)

Apr 4, 2018:

3:56 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4732]) Refs #1029. Specimen tube registration updated in the case …
3:56 PM Changeset [4732] by olle
Refs #1029. Specimen tube registration updated in the case section …
1:54 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4731]) Refs #1029. …
1:47 PM Changeset [4731] by olle
Refs #1029. MeLuDI updated in sample report servlet code with debug …
12:30 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4730]) Refs #1029. Specimen tube registration updated in the set …
12:30 PM Changeset [4730] by olle
Refs #1029. Specimen tube registration updated in the set of mutation …
11:23 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4729]) Refs #1029. MeLuDI updated by extending list of menu …
11:23 AM Changeset [4729] by olle
Refs #1029. MeLuDI updated by extending list of menu options for …
10:41 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4728]) References #1031: Define a genotype QC flag that can be …
10:41 AM Changeset [4728] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
9:18 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4727]) Refs #1029. MeLuDI updated in most wizards by specifying …
9:18 AM Changeset [4727] by olle
Refs #1029. MeLuDI updated in most wizards by specifying that a …

Apr 3, 2018:

8:45 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4726]) Refs #1029. Referral generation updated in servlet by …
8:45 AM Changeset [4726] by olle
Refs #1029. Referral generation updated in servlet by exchanging …

Mar 29, 2018:

1:39 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4725]) Refs #1029. MeLuDI updated by adding sites "Halmstad" …
1:39 PM Changeset [4725] by olle
Refs #1029. MeLuDI updated by adding sites "Halmstad" and …
1:13 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4724]) Refs #1029. Referral generation updated: i. The …
1:13 PM Changeset [4724] by olle
Refs #1029. Referral generation updated: i. The MeLuDI main page …
1:09 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: * Referral generation should be updated: i. The …
11:29 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4723]) Refs #1029. MeLuDI updated in case/sample registration …
11:29 AM Changeset [4723] by olle
Refs #1029. MeLuDI updated in case/sample registration wizards for …
11:27 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: * MeLuDI should be updated in case/sample …
10:38 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4722]) Refs #1029. MeLuDI updated with new configuration flag …
10:38 AM Changeset [4722] by olle
Refs #1029. MeLuDI updated with new configuration flag …
10:04 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: * MeLuDI should be updated with new configuration flag …
8:16 AM Ticket #1034 (Remove expression matrix from release exporter) closed by Nicklas Nordborg
fixed: (In [4721]) Fixes #1034: Remove expression matrix from release exporter
8:16 AM Changeset [4721] by Nicklas Nordborg
Fixes #1034: Remove expression matrix from release exporter

Mar 28, 2018:

3:48 PM Ticket #1034 (Remove expression matrix from release exporter) created by Nicklas Nordborg
The files are getting rather big and difficult to work with.
3:23 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4720]) References #1022: INCA import/statistics wizards changes …
3:23 PM Changeset [4720] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
2:14 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4719]) References #1022: INCA import/statistics wizards changes …
2:14 PM Changeset [4719] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
1:13 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4718]) References #1022: INCA import/statistics wizards changes …
1:13 PM Changeset [4718] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
12:33 PM Ticket #1033 (The INCA export wizard should only export personal numbers) closed by Nicklas Nordborg
fixed: (In [4717]) Fixes #1033: The INCA export wizard should only export …
12:33 PM Changeset [4717] by Nicklas Nordborg
Fixes #1033: The INCA export wizard should only export personal …

Mar 27, 2018:

2:11 PM Ticket #1033 (The INCA export wizard should only export personal numbers) created by Nicklas Nordborg
All other information in the file should be removed.

Mar 26, 2018:

9:37 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Discussion regarding site prefix: * Currently the only MeLuDI …
9:14 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4716]) Refs #1029. MeLuDI updated with new configuration flag …
9:14 AM Changeset [4716] by olle
Refs #1029. MeLuDI updated with new configuration flag …
9:12 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: MeLuDI should be updated with new configuration flag …
8:48 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4715]) Refs #1029. New directory fonts/ added to META-INF/
8:48 AM Changeset [4715] by olle
Refs #1029. New directory fonts/ added to META-INF/ with OpenSans …
8:44 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4714]) Refs #1029. MANIFEST.MF file in META-INF/ updated with …
8:44 AM Changeset [4714] by olle
Refs #1029. MANIFEST.MF file in META-INF/ updated with new line …

Mar 22, 2018:

9:53 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4713]) References #1031: Define a genotype QC flag that can be …
9:53 AM Changeset [4713] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
8:27 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4712]) References #1031: Define a genotype QC flag that can be …
8:27 AM Changeset [4712] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …

Mar 20, 2018:

12:46 PM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4711]) References #1031: Define a genotype QC flag that can be …
12:46 PM Changeset [4711] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
12:39 PM net.sf.basedb.inca edited by Nicklas Nordborg
Added 1.2-dev test release (diff)
8:58 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4710]) References #1031: Define a genotype QC flag that can be …
8:58 AM Changeset [4710] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
8:45 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
Status changed
8:34 AM Ticket #1021 (Add INCA 2.0 columns to the blacklist) updated by Nicklas Nordborg
(In [4709]) References #1021: Add INCA 2.0 columns to the blacklist …
8:34 AM Changeset [4709] by Nicklas Nordborg
References #1021: Add INCA 2.0 columns to the blacklist Added: * …

Mar 19, 2018:

1:41 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) closed by Nicklas Nordborg
fixed
1:40 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
See Reggie 4.16 update notes for …
1:38 PM net.sf.basedb.reggie/notes416 created by Nicklas Nordborg
Added a note about INCA 2 changes
12:59 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
A file with all INCA 2 annotation type definitions has been uploaded …
12:53 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4708]) References #1022: INCA import/statistics wizards changes …
12:53 PM Changeset [4708] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:25 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4707]) References #1022: INCA import/statistics wizards changes …
11:25 AM Changeset [4707] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
9:49 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4706]) Refs #1029. First import of code for referral generation, …
9:49 AM Changeset [4706] by olle
Refs #1029. First import of code for referral generation, taken from …

Mar 16, 2018:

2:29 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
(In [4705]) References #1024: Create annotation type definitions for …
2:29 PM Changeset [4705] by Nicklas Nordborg
References #1024: Create annotation type definitions for INCA 2.0 …
2:26 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4704]) References #1022: INCA import/statistics wizards changes …
2:26 PM Changeset [4704] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
1:28 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4703]) References #1022: INCA import/statistics wizards changes …
1:28 PM Changeset [4703] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:37 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4702]) References #1022: INCA import/statistics wizards changes …
11:37 AM Changeset [4702] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:32 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
Status changed
9:14 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) closed by Nicklas Nordborg
fixed: (In [4701]) Fixes #1032: Reference date batch update wizard changes …
9:14 AM Changeset [4701] by Nicklas Nordborg
Fixes #1032: Reference date batch update wizard changes due to INCA …
8:29 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) updated by Nicklas Nordborg
Status, Summary changed
8:28 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) created by Nicklas Nordborg
The reference date batch update wizard need to be updated to use the …
8:20 AM Ticket #1023 (Release exporter changes due to INCA 2.0) closed by Nicklas Nordborg
fixed: (In [4700]) Fixes #1023: Release exporter changes due to INCA 2.0 The …
8:20 AM Changeset [4700] by Nicklas Nordborg
Fixes #1023: Release exporter changes due to INCA 2.0 The release …
7:51 AM Ticket #1023 (Release exporter changes due to INCA 2.0) updated by Nicklas Nordborg
Status changed
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