Timeline



Jan 9, 2015:

11:23 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3070]) References #717: Auto-confirmation service Implemented …
11:23 AM Changeset [3070] by Nicklas Nordborg
References #717: Auto-confirmation service Implemented …
8:24 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3069]) References #717: Auto-confirmation service Implemented …
8:24 AM Changeset [3069] by Nicklas Nordborg
References #717: Auto-confirmation service Implemented …

Jan 8, 2015:

10:53 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3068]) Refs #725. JSP file case_summary.jsp in …
10:53 AM Changeset [3068] by olle
Refs #725. JSP file case_summary.jsp in resources/reports/ updated …
10:33 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3067]) Refs #725. Specimen tube registration updated to include …
10:33 AM Changeset [3067] by olle
Refs #725. Specimen tube registration updated to include an input …

Jan 7, 2015:

11:33 AM Changeset [3066] by Nicklas Nordborg
Merge Reggie 2.18.2 to trunk.
11:32 AM Changeset [3065] by Nicklas Nordborg
Preparing for future release of Reggie 2.18.3
11:29 AM Milestone Reggie v2.18.2 completed
Bug fixes for Reggie 2.18.1. See [wiki:net.sf.basedb.reggie Reggie …
11:29 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.18.2 (diff)
11:28 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.18.2 (diff)
11:27 AM reggie-2.18.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.18.2
11:25 AM Changeset [3064] by Nicklas Nordborg
Tagging Reggie 2.18.2
11:25 AM Changeset [3063] by Nicklas Nordborg
Preparing to release Reggie 2.18.2
11:22 AM Ticket #727 (RNAQC importer says "No 'RNA Quality Score' value found....; using ...) updated by Nicklas Nordborg
(In [3062]) References #727: RNAQC importer says "No 'RNA Quality …
11:22 AM Changeset [3062] by Nicklas Nordborg
References #727: RNAQC importer says "No 'RNA Quality Score' value …
11:16 AM Ticket #727 (RNAQC importer says "No 'RNA Quality Score' value found....; using ...) closed by Nicklas Nordborg
fixed: (In [3061]) Fixes #727: RNAQC importer says "No 'RNA Quality Score' …
11:16 AM Changeset [3061] by Nicklas Nordborg
Fixes #727: RNAQC importer says "No 'RNA Quality Score' value …
11:09 AM Ticket #727 (RNAQC importer says "No 'RNA Quality Score' value found....; using ...) updated by Nicklas Nordborg
I think I found the cause of this. The background is that #669
10:55 AM no_rqs.png attached to Ticket #727 by Nicklas Nordborg
10:54 AM Ticket #727 (RNAQC importer says "No 'RNA Quality Score' value found....; using ...) created by Nicklas Nordborg
The 'Import RQS scores from Caliper well table file' wizard seems to …

Dec 19, 2014:

2:07 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
Functional specification update: * Specimen tube registration should …
1:54 PM Ticket #726 (Improve performance of counter on index page) updated by Nicklas Nordborg
Status changed
1:22 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3060]) Refs #725. Bugged fixed in sample report generator, that …
1:22 PM Changeset [3060] by olle
Refs #725. Bugged fixed in sample report generator, that led to no …
1:03 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
Bug found in sample report generator: * A bug was introduced in the …
12:48 PM Ticket #726 (Improve performance of counter on index page) updated by Nicklas Nordborg
(In [3059]) References #726: Improve performance of counter on index …
12:48 PM Changeset [3059] by Nicklas Nordborg
References #726: Improve performance of counter on index page Added …
10:06 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3058]) Refs #725. Project focus updated with new option "Colon …
10:06 AM Changeset [3058] by olle
Refs #725. Project focus updated with new option "Colon cancer": 1. …
10:04 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
Functional specification update: * Project focus should have a new …
8:21 AM Ticket #726 (Improve performance of counter on index page) created by Nicklas Nordborg
We have made some improvements before, but with the current design it …
8:01 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3057]) Refs #725. Updates due to version number change to …
8:01 AM Changeset [3057] by olle
Refs #725. Updates due to version number change to "1.2-dev". 1. …
7:44 AM Ticket #721 (Item not found: BioMaterialList[id=0] when trying to download HE glass ...) closed by Nicklas Nordborg
fixed: (In [3056]) Fixes #721: Item not found: BioMaterialList[id=0] when …
7:44 AM Changeset [3056] by Nicklas Nordborg
Fixes #721: Item not found: BioMaterialList[id=0] when trying to …
7:43 AM Ticket #721 (Item not found: BioMaterialList[id=0] when trying to download HE glass ...) updated by Nicklas Nordborg
Milestone changed
7:43 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3055]) References #717: Auto-confirmation service Added …
7:43 AM Changeset [3055] by Nicklas Nordborg
References #717: Auto-confirmation service Added …

Dec 18, 2014:

4:27 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690
4:26 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
Status changed
Ticket accepted.
4:26 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDi v.1.1.
4:22 PM Milestone MeLuDi v1.1 completed
Updates of the MeLuDi extension to BASE, a package of registration …
4:19 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDi version 1.1 has been created. Its released …
4:17 PM PluginDownload edited by olle
MeLuDi package updated to version 1.1 (diff)
4:12 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDi 1.1 (diff)
4:06 PM Changeset [3054] by olle
Creating meludi tag 1.1
4:02 PM meludi-1.1.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDi BASE extension package version 1.1
3:46 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3053]) Refs #718. Updates due to version number change to …
3:46 PM Changeset [3053] by olle
Refs #718. Updates due to version number change to "1.1". 1. …
2:56 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
Background: The full retraction module is intended to contain 3 …
7:53 AM Ticket #724 (Summary counts on index page) closed by Nicklas Nordborg
fixed: (In [3052]) Fixes #724: Summary counts on index page
7:53 AM Changeset [3052] by Nicklas Nordborg
Fixes #724: Summary counts on index page
7:52 AM Ticket #724 (Summary counts on index page) created by Nicklas Nordborg
It would be nice to have some summary counts on the index page: * …

Dec 17, 2014:

2:32 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
Traceability note: * The retraction wizard was introduced in Ticket …
2:30 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
Status changed
Ticket accepted.
2:30 PM Ticket #723 (Retraction wizard - Step 2: Follow up) created by olle
The first step of the retraction wizard was concerned with marking …
1:31 PM Tickets #717,​722 batch updated by Nicklas Nordborg
fixed: (In [3051]) Fixes #722 and references #717. Thanks to the new …
1:31 PM Changeset [3051] by Nicklas Nordborg
Fixes #722 and references #717. Thanks to the new auto-confirmation …
1:08 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3050]) Refs #718. MeLuDi updated by removal of annotation types …
1:08 PM Changeset [3050] by olle
Refs #718. MeLuDi updated by removal of annotation types …
12:56 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Design update: * Annotation type AnnotationType.FLAG should be …
12:32 PM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3049]) References #717: Auto-confirmation service Implemented …
12:32 PM Changeset [3049] by Nicklas Nordborg
References #717: Auto-confirmation service Implemented the next step …
9:54 AM Ticket #722 (The count for Gene report wizard doesn't decrease after starting gene ...) updated by Nicklas Nordborg
(In [3048]) References #722: The count for Gene report wizard doesn't …
9:54 AM Changeset [3048] by Nicklas Nordborg
References #722: The count for Gene report wizard doesn't decrease …
9:31 AM Ticket #722 (The count for Gene report wizard doesn't decrease after starting gene ...) created by Nicklas Nordborg
The counter checks the number of raw bioassays that doesn't have a …

Dec 16, 2014:

3:40 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3047]) Refs #718. Java servlet classes/files …
3:40 PM Changeset [3047] by olle
Refs #718. Java servlet classes/files CaseSummaryServlet.java, …
2:46 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3046]) Refs #718. Java class/file ReportTableUtil.java and Java …
2:46 PM Changeset [3046] by olle
Refs #718. Java class/file ReportTableUtil.java and Java servlet …
2:15 PM Ticket #721 (Item not found: BioMaterialList[id=0] when trying to download HE glass ...) updated by Nicklas Nordborg
Seems like this was broken in [2970] which modified the code for …
2:04 PM Ticket #721 (Item not found: BioMaterialList[id=0] when trying to download HE glass ...) created by Nicklas Nordborg
The "Lab tracking protocol for FFPE/HE" wizard fails when using the …
11:36 AM Ticket #720 (Change major Reggie version to 3) closed by Nicklas Nordborg
fixed: (In [3045]) Fixes #720: Change major Reggie version to 3
11:36 AM Changeset [3045] by Nicklas Nordborg
Fixes #720: Change major Reggie version to 3
11:33 AM Ticket #720 (Change major Reggie version to 3) created by Nicklas Nordborg
It was decided that the next Reggie version will be Reggie 3.0 instead …
8:44 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3044]) Refs #718. Currently unused subtype items have been …
8:44 AM Changeset [3044] by olle
Refs #718. Currently unused subtype items have been removed or …
8:23 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3043]) Refs #718. Java class/file SpecimenTubeServlet.java in …
8:23 AM Changeset [3043] by olle
Refs #718. Java class/file SpecimenTubeServlet.java in …
8:14 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3042]) Refs #718. MeLuDi updated to allow gaps in the pattern of …
8:14 AM Changeset [3042] by olle
Refs #718. MeLuDi updated to allow gaps in the pattern of used wells …
8:12 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Design update to allow gaps in the pattern of used wells in a bioplate …
7:57 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Functional specification update: * When searching for a free well …

Dec 15, 2014:

12:50 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3041]) Refs #718. Case summary input field hint and notification …
12:50 PM Changeset [3041] by olle
Refs #718. Case summary input field hint and notification message …
8:59 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
Status changed
8:37 AM Changeset [3040] by Nicklas Nordborg
Merge Reggie 2.18.1 to the trunk.
8:30 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.18.1 (diff)
8:29 AM Changeset [3039] by Nicklas Nordborg
Preparing for future release Reggie 2.18.2
8:27 AM Milestone Reggie v2.18.1 completed
Bug fixes for Reggie 2.18. See [wiki:net.sf.basedb.reggie Reggie …
8:26 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.18.1 (diff)
8:25 AM reggie-2.18.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.18.1
8:23 AM Changeset [3038] by Nicklas Nordborg
Tagging Reggie 2.18.1
8:23 AM Changeset [3037] by Nicklas Nordborg
Preparing to release Reggie 2.18.1
8:20 AM Ticket #719 (NullPointerException in extraction registration wizard) closed by Nicklas Nordborg
fixed: (In [3036]) Fixes #719: NullPointerException in extraction …
8:20 AM Changeset [3036] by Nicklas Nordborg
Fixes #719: NullPointerException in extraction registration wizard
8:19 AM npe.jpg attached to Ticket #719 by Nicklas Nordborg
8:17 AM Ticket #719 (NullPointerException in extraction registration wizard) created by Nicklas Nordborg
When the "PreNormalize" option is NOT selected. See image. The only …

Dec 12, 2014:

3:38 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3035]) Refs #718. Outermost Ant build file build.xml in /
3:38 PM Changeset [3035] by olle
Refs #718. Outermost Ant build file build.xml in / updated by …
3:31 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690
3:30 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Status changed
Ticket accepted.
3:29 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDi v.1.0.
2:55 PM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3034]) References #717: Auto-confirmation service Stared to …
2:54 PM Changeset [3034] by Nicklas Nordborg
References #717: Auto-confirmation service Stared to implement actual …
12:44 PM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3033]) References #717: Auto-confirmation service Refactor …
12:44 PM Changeset [3033] by Nicklas Nordborg
References #717: Auto-confirmation service Refactor session control …
10:41 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3032]) References #717: Auto-confirmation service Added …
10:41 AM Changeset [3032] by Nicklas Nordborg
References #717: Auto-confirmation service Added AutoConfirmService
7:54 AM Milestone MeLuDi v1.0 completed
The first release of the MeLuDi extension to BASE, a package of …
7:48 AM PluginDownload edited by olle
Added information on MeLuDi 1.0 (diff)
7:32 AM Changeset [3031] by olle
Tagging release MeLuDi 1.0
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