Timeline



Jun 18, 2008:

2:52 PM Ticket #120 (Create a normalization plug-in package.) updated by Jari Häkkinen
Description changed
2:46 PM Ticket #120 (Create a normalization plug-in package.) created by Jari Häkkinen
A normalization package will be created. This will contain several …
2:42 PM Ticket #119 (Create rank invariant normalizer) created by Jari Häkkinen
2:41 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) created by Jari Häkkinen
This normalizer is based on the work of Workman et al., …
2:40 PM Ticket #117 (Create average nomralization plug-in) created by Jari Häkkinen
9:36 AM PluginDownload edited by Jari Häkkinen
(diff)

Jun 17, 2008:

11:16 AM Changeset [722] by Nicklas Nordborg
Fixes #116: Make the MEV launcher extension aware of bioassaysets that …
11:16 AM Ticket #116 (Make the MEV launcher extension aware of bioassaysets that store data ...) closed by Nicklas Nordborg
fixed: (In [722]) Fixes #116: Make the MEV launcher extension aware of …
11:09 AM Ticket #116 (Make the MEV launcher extension aware of bioassaysets that store data ...) updated by Nicklas Nordborg
Status changed
9:24 AM Ticket #116 (Make the MEV launcher extension aware of bioassaysets that store data ...) created by Nicklas Nordborg
This will be implemented in BASE 2.8. See …

Jun 12, 2008:

10:10 PM Ticket #34 (move base.css) updated by Jari Häkkinen
Milestone changed
10:09 PM Ticket #41 (Add data to output: sign flag, sign specific rank) updated by Jari Häkkinen
Milestone changed
10:09 PM Ticket #39 (create reporter list (se.lu.onk.ztest)) updated by Jari Häkkinen
Milestone changed
10:09 PM Ticket #52 (Add educational material and use cases.) updated by Jari Häkkinen
Milestone changed
10:09 PM Ticket #71 (write HowToRelease document for se.lu.thep.WeNNI) updated by Jari Häkkinen
Milestone changed
10:08 PM Ticket #64 (configure does not find basefile.h) updated by Jari Häkkinen
Milestone changed
10:08 PM Ticket #63 (make distcheck should work) updated by Jari Häkkinen
Milestone changed
10:08 PM Ticket #60 (explain how to run wenni (base1 version) against a base_devkit) updated by Jari Häkkinen
Milestone changed
10:08 PM Ticket #55 (update ChangeLog) updated by Jari Häkkinen
Milestone changed
10:08 PM Ticket #54 (update README) updated by Jari Häkkinen
Milestone changed
10:07 PM Ticket #53 (update INSTALL) updated by Jari Häkkinen
Milestone changed
10:07 PM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by Jari Häkkinen
Milestone changed
10:03 PM Ticket #74 (unmappable character for encoding UTF8 Copyright (C) Jari Häkkinen ...) updated by Jari Häkkinen
Milestone changed
10:03 PM Ticket #52 (Add educational material and use cases.) updated by Jari Häkkinen
Milestone changed
10:02 PM Ticket #64 (configure does not find basefile.h) updated by Jari Häkkinen
Milestone changed
10:02 PM Ticket #97 (Remove Plier support from se.lu.thep.affymetrix) updated by Jari Häkkinen
Milestone changed
10:02 PM Ticket #96 (Make the se.lu.thep.affymetrix plug-in compatible with the ...) updated by Jari Häkkinen
Milestone changed
10:01 PM Ticket #77 (Update information about webservice) updated by Jari Häkkinen
Status, Description, Milestone changed
9:59 PM Ticket #70 (Add releasing procedure to se.lu.thep.affymetrix) updated by Jari Häkkinen
Milestone changed
3:11 PM Ticket #43 (Add request for proper default permissions (se.lu.thep.affymetrix).) updated by Jari Häkkinen
Milestone changed

Jun 11, 2008:

11:53 PM se.lu.onk.CGHDataDumper edited by Jari Häkkinen
Added information about the plug-in. (diff)
4:10 PM Changeset [721] by Jari Häkkinen
Shuffling directory structure to the recommended trunk and tags.
4:05 PM Changeset [720] by Jari Häkkinen
Importing CGH Data Dumper
3:09 PM PluginDownload edited by Jari Häkkinen
Adding CGH Data dumper (diff)
3:06 PM se.lu.onk.CGHDataDumper created by Jari Häkkinen

Jun 9, 2008:

4:55 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
4:49 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
4:48 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
4:48 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
4:41 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
3:38 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
3:37 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
3:37 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
3:33 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
3:33 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
3:07 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:39 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:35 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:32 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:24 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:23 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:22 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:22 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:20 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
12:04 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)

Jun 5, 2008:

1:55 PM Changeset [719] by Nicklas Nordborg
References #114: Implement FTP Server If server fails to start, makes …
1:55 PM Ticket #114 (Implement FTP Server) updated by Nicklas Nordborg
(In [719]) References #114: Implement FTP Server If server fails to …

Jun 4, 2008:

11:43 AM Changeset [718] by Jari Häkkinen
Also share manifest file.

Jun 3, 2008:

11:19 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by Jari Häkkinen
So, I cannot stop testing. I decided to edit the MIME type …
11:06 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by Jari Häkkinen
The problem is that the file is not recognized as a jnlp file by my …
9:19 AM Changeset [717] by Nicklas Nordborg
References #114: Implement FTP Server Stopping and starting now …
9:19 AM Ticket #114 (Implement FTP Server) updated by Nicklas Nordborg
(In [717]) References #114: Implement FTP Server Stopping and …

Jun 2, 2008:

8:44 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by Nicklas Nordborg
If I go to the dialog `Edit -> Preferences -> Content -> File types …
3:51 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') closed by Jari Häkkinen
invalid: I have no information on how to resolve this. Following hints on the …
2:32 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by Jari Häkkinen
My firefox preference says: […] and it is set to open the file with …
2:29 PM Changeset [716] by Nicklas Nordborg
References #114: Implement FTP Server Cleaned up code and …
2:29 PM Ticket #114 (Implement FTP Server) updated by Nicklas Nordborg
(In [716]) References #114: Implement FTP Server Cleaned up code and …
2:19 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:17 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:16 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:14 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
1:17 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by Nicklas Nordborg
By the way, I don't think your browser triggers on JSP files, because, …
1:10 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by Nicklas Nordborg
I think the problem is within your web browser. If configured …
12:32 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
12:22 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by Jari Häkkinen
Description changed
12:20 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') created by Jari Häkkinen
For Java web start the startup file have jnlp as extension, here it …
11:13 AM Ticket #64 (configure does not find basefile.h) updated by Jari Häkkinen
Status, Description changed
I am obviously not working on this, so lets remove the assigned flag.

May 30, 2008:

3:22 PM smooth-713.zip attached to se.lu.onk.Smooth by Jari Häkkinen
3:22 PM se.lu.onk.Smooth edited by Jari Häkkinen
Releasing new Smooth (repository revision 713) (diff)
3:06 PM PluginDownload edited by Jari Häkkinen
Moved around text. (diff)
9:29 AM Changeset [715] by Nicklas Nordborg
References #114: Implement FTP Server Settings some properties for trac.
9:29 AM Ticket #114 (Implement FTP Server) updated by Nicklas Nordborg
(In [715]) References #114: Implement FTP Server Settings some …
9:26 AM net.sf.basedb.ftp edited by Nicklas Nordborg
Updated FTP Server documentation (diff)
9:11 AM Changeset [714] by Nicklas Nordborg
References #114: Implement FTP Server Initial checkin.
9:11 AM Ticket #114 (Implement FTP Server) updated by Nicklas Nordborg
(In [714]) References #114: Implement FTP Server Initial checkin.
9:10 AM Ticket #114 (Implement FTP Server) updated by Nicklas Nordborg
Status changed

May 29, 2008:

5:57 PM Changeset [713] by Jari Häkkinen
Made Smooth to look for parameter section as it is called in the base …
5:55 PM Changeset [712] by Jari Häkkinen
Smooth requires additional jars to be included in the package. Removed …
5:51 PM Changeset [711] by Jari Häkkinen
Fixes BASEfile serial spot section issue: The reader did not get …
2:08 PM Changeset [710] by Nicklas Nordborg
Adding ftp server tags folder
2:08 PM Changeset [709] by Nicklas Nordborg
Adding FTP Server trunk folder
2:08 PM Changeset [708] by Nicklas Nordborg
Adding FTP Server root folder

May 28, 2008:

8:19 PM Ticket #114 (Implement FTP Server) created by Nicklas Nordborg
Moved from http://base.thep.lu.se/ticket/408
8:18 PM net.sf.basedb.ftp created by Nicklas Nordborg
Adding FTPServer info page
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