Timeline



Feb 21, 2008:

4:44 PM Changeset [592] by Martin Svensson
References #101. Started on the plugin. A commit for the weekend.
4:44 PM Ticket #101 (Import plug-in for SNP raw data) updated by Martin Svensson
(In [592]) References #101. Started on the plugin. A commit for the …
1:02 PM Ticket #101 (Import plug-in for SNP raw data) updated by Martin Svensson
Status, Owner changed
11:40 AM Ticket #93 (Illumina SNP validator and meta-data extractor) updated by Martin Svensson
(In [591]) References #93 Correct some comments and removed debug-code
11:40 AM Changeset [591] by Martin Svensson
References #93 Correct some comments and removed debug-code
11:36 AM Changeset [590] by Martin Svensson
References #93 You can now validate and extract meta-data from …
11:36 AM Ticket #93 (Illumina SNP validator and meta-data extractor) updated by Martin Svensson
(In [590]) References #93 You can now validate and extract meta-data …
7:52 AM Ticket #93 (Illumina SNP validator and meta-data extractor) updated by Martin Svensson
Status, Owner changed

Feb 20, 2008:

3:49 PM Changeset [589] by Martin Svensson
References #100 Installation is now including SNP platform-variant and …
3:49 PM Ticket #100 (Add Illumina SNP platform to the installation program) updated by Martin Svensson
(In [589]) References #100 Installation is now including SNP …
1:35 PM Ticket #101 (Import plug-in for SNP raw data) updated by Martin Svensson
Description changed
1:05 PM Ticket #100 (Add Illumina SNP platform to the installation program) updated by Martin Svensson
Status, Owner changed
11:33 AM Ticket #102 (Intensity calculator for Illumina SNP data) updated by Nicklas Nordborg
Milestone changed
11:33 AM Ticket #101 (Import plug-in for SNP raw data) updated by Nicklas Nordborg
Milestone changed
11:33 AM Ticket #93 (Illumina SNP validator and meta-data extractor) updated by Nicklas Nordborg
Milestone changed
11:32 AM Ticket #100 (Add Illumina SNP platform to the installation program) updated by Nicklas Nordborg
Priority, Milestone changed
11:02 AM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) closed by Nicklas Nordborg
fixed: (In [588]) Fixes #91: Import Illumina Bead Summary(IBS) files as raw data
11:02 AM Changeset [588] by Nicklas Nordborg
Fixes #91: Import Illumina Bead Summary(IBS) files as raw data
10:46 AM Ticket #101 (Import plug-in for SNP raw data) updated by Nicklas Nordborg
Priority changed
10:46 AM Ticket #93 (Illumina SNP validator and meta-data extractor) updated by Nicklas Nordborg
Priority changed
10:45 AM Ticket #100 (Add Illumina SNP platform to the installation program) updated by Nicklas Nordborg
Priority changed
9:58 AM Ticket #102 (Intensity calculator for Illumina SNP data) created by Nicklas Nordborg
Since the raw data is stored in files, this plug-in needs to extract …
9:52 AM Ticket #100 (Add Illumina SNP platform to the installation program) updated by Nicklas Nordborg
Description changed
9:52 AM Ticket #101 (Import plug-in for SNP raw data) created by Nicklas Nordborg
SNP data comes from BeadStudio with one file that contains several …
9:46 AM Ticket #95 (Intensity calculator for Illumina expression data) updated by Nicklas Nordborg
Summary changed
9:45 AM Ticket #100 (Add Illumina SNP platform to the installation program) created by Nicklas Nordborg
We now have a bit more information about the Illumina SNP platform. It …
9:37 AM Ticket #93 (Illumina SNP validator and meta-data extractor) updated by Nicklas Nordborg
This is for the array design. A BPM file is opened by BeadStudio and …

Feb 18, 2008:

1:36 PM Changeset [587] by Martin Svensson
References #89 Correct the name of the plug-in
1:36 PM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [587]) References #89 Correct the name of the plug-in
11:26 AM Changeset [586] by Nicklas Nordborg
References #94: Import reporter annotations from bgx files Added …
11:26 AM Ticket #94 (Import reporter annotations from bgx files) updated by Nicklas Nordborg
(In [586]) References #94: Import reporter annotations from bgx files …

Feb 13, 2008:

9:54 AM Changeset [585] by Nicklas Nordborg
References #89: Installation program and documentation Updated …
9:54 AM Ticket #89 (Installation program and documentation) updated by Nicklas Nordborg
(In [585]) References #89: Installation program and documentation …

Feb 12, 2008:

11:17 AM net.sf.basedb.illumina edited by Nicklas Nordborg
(diff)
9:46 AM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) closed by Nicklas Nordborg
fixed: (In [584]) Fixes #98: Implement validator and metadata extractor …
9:46 AM Changeset [584] by Nicklas Nordborg
Fixes #98: Implement validator and metadata extractor plug-in for BGX files
9:40 AM Ticket #89 (Installation program and documentation) updated by Nicklas Nordborg
(In [583]) References #89: Installation program and documentation …
9:40 AM Changeset [583] by Nicklas Nordborg
References #89: Installation program and documentation Minor …

Feb 11, 2008:

3:35 PM Changeset [582] by Nicklas Nordborg
Removed unused imports
3:14 PM Changeset [581] by Nicklas Nordborg
References #90: Create array design from a bgx-file Fixed missing …
3:14 PM Ticket #90 (Create array design from a bgx-file) updated by Nicklas Nordborg
(In [581]) References #90: Create array design from a bgx-file Fixed …
2:50 PM Changeset [580] by Nicklas Nordborg
References #89: Installation program and documentation Added 'Getting …
2:50 PM Ticket #89 (Installation program and documentation) updated by Nicklas Nordborg
(In [580]) References #89: Installation program and documentation …
2:46 PM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) reopened by Nicklas Nordborg
The metadata extractor only extracts the number of controls, not the …

Feb 8, 2008:

2:52 PM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) closed by Martin Svensson
fixed: (In [579]) Fixes #98 Implement validator and metadata extractor …
2:52 PM Changeset [579] by Martin Svensson
Fixes #98 Implement validator and metadata extractor plug-in for BGX files
2:21 PM Changeset [578] by Martin Svensson
Fixes #90 Create array design from a bgx-file.
2:21 PM Ticket #90 (Create array design from a bgx-file) closed by Martin Svensson
fixed: (In [578]) Fixes #90 Create array design from a bgx-file.
2:20 PM Ticket #90 (Create array design from a bgx-file) updated by Martin Svensson
Description changed
1:42 PM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) updated by Martin Svensson
Description, Summary changed
Changed scandata -> Bead Summary
1:33 PM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [577]) References #89 Installation plug-in is now able to create …
1:33 PM Changeset [577] by Martin Svensson
References #89 Installation plug-in is now able to create Illumina …

Feb 7, 2008:

8:02 PM Ticket #89 (Installation program and documentation) updated by Nicklas Nordborg
What about creating Scanner (Hardware) and Software entries? …
4:43 PM Changeset [576] by Martin Svensson
References #89 Changed to wiki format and configured some svn properties
4:43 PM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [576]) References #89 Changed to wiki format and configured some …
2:19 PM Changeset [575] by Martin Svensson
Reference #94 Added more extended properties for Illumina reporters …
10:14 AM Ticket #99 (The tagging system of the repository should be changed) created by Jari Häkkinen
Jari has the details in his head, contact him on this issue.
9:54 AM Changeset [574] by Jari Häkkinen
Added information on how to resolve missing probe set situations.

Feb 6, 2008:

4:47 PM Changeset [573] by Martin Svensson
References #89 Added extended properties to be used with Illumina in BASE.
4:47 PM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [573]) References #89 Added extended properties to be used with …
3:46 PM Changeset [572] by Martin Svensson
References #89 Change names, ids and variables according to …
3:46 PM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [572]) References #89 Change names, ids and variables according to …
11:28 AM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [571]) References #89 Updated svn-properties for README file
11:28 AM Changeset [571] by Martin Svensson
References #89 Updated svn-properties for README file
11:22 AM Changeset [570] by Martin Svensson
References #89 Inserted the readme-text in wiki format.
11:22 AM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [570]) References #89 Inserted the readme-text in wiki format.

Feb 5, 2008:

8:40 PM net.sf.basedb.illumina edited by markus
(diff)
5:13 PM se.lu.thep.affymetrix edited by Jari Häkkinen
APT plug-in location changed. (diff)
5:11 PM PluginDownload edited by Jari Häkkinen
APT plug-in location changed. (diff)
4:51 PM Changeset [569] by Martin Svensson
References #98 The validator and meta data reader is done. The …
4:51 PM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) updated by Martin Svensson
(In [569]) References #98 The validator and meta data reader is done. …
12:27 PM Changeset [568] by Nicklas Nordborg
References #91: Import Illumina scandata files as raw data Call …
12:27 PM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) updated by Nicklas Nordborg
(In [568]) References #91: Import Illumina scandata files as raw data …

Feb 1, 2008:

4:45 PM Changeset [567] by Martin Svensson
References #98 A start of a BGX validator/metadatareader.
4:45 PM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) updated by Martin Svensson
(In [567]) References #98 A start of a BGX validator/metadatareader.
10:59 AM Changeset [566] by Nicklas Nordborg
References #89: Installation program and documentation Added rest …
10:59 AM Ticket #89 (Installation program and documentation) updated by Nicklas Nordborg
(In [566]) References #89: Installation program and documentation …
8:14 AM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) updated by Martin Svensson
Status, Owner changed

Jan 31, 2008:

4:48 PM Ticket #90 (Create array design from a bgx-file) updated by Martin Svensson
(In [565]) References #90 Added a default plugin configuration to come …
4:48 PM Changeset [565] by Martin Svensson
References #90 Added a default plugin configuration to come along with …
3:01 PM Changeset [564] by Nicklas Nordborg
References #91: Import Illumina scandata files as raw data Error …
3:01 PM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) updated by Nicklas Nordborg
(In [564]) References #91: Import Illumina scandata files as raw data …
9:14 AM Ticket #98 (Implement validator and metadata extractor plug-in for BGX files) created by Nicklas Nordborg
It should simply check the [Heading] section in the beginning of the …

Jan 30, 2008:

2:51 PM Changeset [563] by Martin Svensson
References #90 Refine comments and removed some blank lines.
2:51 PM Ticket #90 (Create array design from a bgx-file) updated by Martin Svensson
(In [563]) References #90 Refine comments and removed some blank lines.
2:46 PM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) updated by Nicklas Nordborg
(In [562]) References #91: Import Illumina scandata files as raw data …
2:46 PM Changeset [562] by Nicklas Nordborg
References #91: Import Illumina scandata files as raw data The …
2:29 PM Changeset [561] by Martin Svensson
References #90 The plug-in can now be used to import features to an …
2:29 PM Ticket #90 (Create array design from a bgx-file) updated by Martin Svensson
(In [561]) References #90 The plug-in can now be used to import …

Jan 29, 2008:

4:00 PM Ticket #90 (Create array design from a bgx-file) updated by Martin Svensson
Status, Owner changed
2:53 PM Changeset [560] by Nicklas Nordborg
References #91: Import Illumina scandata files as raw data A skeleton …
2:53 PM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) updated by Nicklas Nordborg
(In [560]) References #91: Import Illumina scandata files as raw data …
11:14 AM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) updated by Nicklas Nordborg
Status, Owner changed
8:51 AM Ticket #94 (Import reporter annotations from bgx files) updated by Nicklas Nordborg
(In [559]) References #94: Import reporter annotations from bgx files …
8:51 AM Changeset [559] by Nicklas Nordborg
References #94: Import reporter annotations from bgx files The …

Jan 28, 2008:

4:31 PM Changeset [558] by mbayer
have fixed several bugs after testing whole imports, notably a problem …
2:03 PM Changeset [557] by Nicklas Nordborg
References #89: Installation program and documentation Documented the …
2:03 PM Ticket #89 (Installation program and documentation) updated by Nicklas Nordborg
(In [557]) References #89: Installation program and documentation …
1:58 PM Changeset [556] by Nicklas Nordborg
References #94: Import reporter annotations from bgx files First …
1:58 PM Ticket #94 (Import reporter annotations from bgx files) updated by Nicklas Nordborg
(In [556]) References #94: Import reporter annotations from bgx files …
11:48 AM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [555]) References #89 Added more property checks when an item …
11:48 AM Changeset [555] by Martin Svensson
References #89 Added more property checks when an item already exists …
7:41 AM Ticket #94 (Import reporter annotations from bgx files) updated by Nicklas Nordborg
Status, Owner changed

Jan 26, 2008:

12:22 AM Ticket #97 (Remove Plier support from se.lu.thep.affymetrix) created by Jari Häkkinen
The Plier algorithm is a part of the …
12:16 AM Ticket #73 (Plier fails to import data) closed by Jari Häkkinen
wontfix: The APT

Jan 25, 2008:

11:35 PM Ticket #96 (Make the se.lu.thep.affymetrix plug-in compatible with the ...) created by Jari Häkkinen
10:39 PM PluginDownload edited by Jari Häkkinen
Added APT plug-in. (diff)
10:39 PM se.lu.thep.affymetrix edited by Jari Häkkinen
Added note about the APT plug-in (superseeds Plier) (diff)
10:24 PM PluginDownload edited by Jari Häkkinen
Clarifying plugin compatibility statement. (diff)
4:38 PM Ticket #89 (Installation program and documentation) updated by Martin Svensson
(In [554]) References #89 Illumina items are now created by the …
4:38 PM Changeset [554] by Martin Svensson
References #89 Illumina items are now created by the installation …
2:47 PM Ticket #95 (Intensity calculator for Illumina expression data) created by Nicklas Nordborg
The regular intensity calculator can be used but only for copying the …
2:42 PM Ticket #93 (Illumina SNP validator and meta-data extractor) updated by Nicklas Nordborg
Milestone changed
2:40 PM Ticket #93 (Illumina SNP validator and meta-data extractor) updated by Nicklas Nordborg
Milestone changed
2:39 PM Ticket #94 (Import reporter annotations from bgx files) created by Nicklas Nordborg
See also #90. We probably need a different plug-in for the reporter …
2:34 PM Ticket #92 (Create Illumina SNP raw data type) closed by Nicklas Nordborg
duplicate: Part of ticket #89
2:25 PM Changeset [553] by Nicklas Nordborg
References #89: Installation program and documentation Added INSTALL file
2:25 PM Ticket #89 (Installation program and documentation) updated by Nicklas Nordborg
(In [553]) References #89: Installation program and documentation …
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