Changes between Initial Version and Version 12 of Ticket #913
- Timestamp:
- Oct 21, 2016, 1:05:23 PM (7 years ago)
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Ticket #913
- Property Milestone Reggie v4.x → Reggie v4.8
- Property Summary Implements a set of wizards for handling outtakes → Implement a set of wizards for handling outtakes
- Property Status new → assigned
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Ticket #913 – Description
initial v12 3 3 1. Define the outtake. An item list with RNA or DNA is used as the starting point. 4 4 5 * A name for the outtake must be specified. 5 6 * A target amount and target volume is specified. 6 * A comment field with some information about the outtake is also required.7 * A comment field with optional information about the outtake. 7 8 8 The wizard should create child aliquots (suffix .a, .a2, etc) for all items in the list and put them in a new "outtake list". Information that is needed for proper dilution should be calculated and stored (details need to be specified). The wizard should also create new boxes and place the aliquots in a predefined order. Typically the same order as the parent items are located in the freezer. Box names should automatically generated using a common prefix (SCAN-B?) and number. The comment should be copied to the aliquots, boxes and new list. This wizard require special permission to be used (existing or new?).9 The wizard should create child aliquots (suffix .a, .a2, etc) for all items in the list and put them in a new "outtake list". The target amount and target volume is stored as annotations on the list. This allows us to calculate dilution information later on. The wizard should also create new boxes and place the aliquots in a predefined order. Typically the same order as the parent items are located in the freezer. Box names should automatically generated using a common prefix (`ScanB-Outtake`) and number (3 digits). The comment should be copied to the aliquots, boxes and new list. This wizard require the `PrepCurator` permission. 9 10 10 2a. Generate lab protocols. The "outtake" list is used to generate a pick list and dilution protocol. Th e protocol must include:11 2a. Generate lab protocols. The "outtake" list is used to generate a pick list and dilution protocol. This wizard require the `SamplePrep` permission. The protocol must include: 11 12 12 13 * Sample name … … 20 21 2b. Generate label file for the label printer 21 22 22 3. Registration that the outtake has been completed. The default action is that everything was successful. It should be possible to select a full or partial failure. In case of a failure it should be possible to specify (per sample) if the material was actually used or not. 23 24 3. Registration that the outtake has been completed. The default action is that everything was successful. It should be possible to select a full or partial failure. In case of a failure it should be possible to specify (per sample) if the material was actually used or not. This wizard require the `SamplePrep` permission. 23 25 24 26 3b. New concentration measurements? This would probably be useful but no decision was made about this. 25 27 26 4. Generate tab-separated delivery file. This file should contain information about the shipped samples. We need to include at least the label and box positions. Estimated concentration is probably also useful. Maybe some more columns? 27 28 4. Generate tab-separated delivery file. This file should contain information about the shipped samples. We need to include at least the label and box positions. Estimated concentration and quantity is probably also useful. Maybe some more columns? This wizard require the `PrepCurator` permission.