Opened 8 years ago

Last modified 8 years ago

#898 closed task

INCA import should create trimmed tab-delimited file with synonymized data — at Version 3

Reported by: olle Owned by: olle
Priority: major Milestone: Reggie v4.6
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by olle)

INCA import should create a trimmed tab-delimited file with synonymized data for analysis outside Reggie/BASE. The new file should be based on the tab-delimited file used for INCA import, with the following differences:

  1. Accrued entries, i.e. those with personal numbers, should have the latter exchanged for the patient item names ("PAT" + 6 figures) in the SCAN-B database.
  2. Apart from columns with headers "PersonalNo" and "PAT_ID", only data in columns corresponding to INCA annotation types should be included.

Change History (3)

comment:1 by olle, 8 years ago

Status: newassigned

Ticket accepted.

comment:2 by olle, 8 years ago

Traceability note:

  • Creation of a csv file to be used when requesting information from the INCA database was introduced in Ticket #487 (Export information intended for INCA).
  • Import of an INCA csv file was introduced in Ticket #525 (Import data from INCA).
  • INCA import was updated in Ticket #896 (INCA import should include laterality mapping column).

comment:3 by olle, 8 years ago

Description: modified (diff)

Ticket description updated:
a. Clarifying that personal numbers should be exchanged for SCAN-B patient item names.
b. Column "PERSNR" is not needed in the output file, since column "PersonalNo" is included.

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