id summary reporter owner description type status priority milestone component resolution keywords cc 1196 Incorrect specifications in the mRNA protocol Nicklas Nordborg Nicklas Nordborg "After extract an RNA comes out with concentration <10ng/µl, which means that all 50µl are needed to be within the protocol limits (100-500ng). Example: {{{ NDConc: 7.159 ng/µl Volume: 50 µl Original quantity: 0.358 µg }}} The pre-normalization wizard handles this case correctly and says that all of the RNA should be used an no water should be added. The mRNA plate design wizard simply shows that the item is a !PreNormalized item and doesn't show any mixing instruction (as it is expected to do) and registration is successful. However, when the mRNA lab protocol is displayed there is a warning message about ""Not enough RNA"" and it says that 69.9 µl should be used. In the database it has also been registered that the mRNA item uses 50µg from the pre-normalized item, leaving it with a remaining quantity of -0.142µg. So for some reason it seems like the mRNA plate design wizard has registered that 50µg should be used even though there is only 0.36µg to use. This started on 2019-09-17 and there are currently 5 pre-normalized RNA items with NDConc<10 in the database with a negative remaining quantity. There are more than a 1000 items before 2019-09-17 with NDConc<10 and they all have 0 remaining quantity. It seems very likely that this problem was caused by Reggie 4.23 which was installed on the server 2019-09-16. " defect closed critical Reggie v4.24 net.sf.basedb.reggie fixed