Opened 3 years ago

Closed 3 years ago

#1124 closed task (fixed)

Pause specimen after registration

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.22
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

In the "Specimen tube registration" wizard it should be possible to "pause" a tube from processing. It could for example, be a checkbox in the third step.

If the "pause" checkbox is selected the specimen should be placed in a different series of storage boxes (prefix=PSp). The wizard need to update the pre-selected storage box positions automatically. No empty slots should be created if there is more than one specimen tube and they have different "pause" status.

A paused specimen should not appear in the "Partition wizard".

A paused specimen can still be a "yellow label" specimen, but it should not appear in the "Yellow label tracking" wizard.

A new wizard is needed that can create a "storage protocol" so that the people in the lab know in which storage boxes and positions to put the paused specimen. This wizard could for example be triggered by an empty AutoProcessing annotation and then set it to "Disabled" when finalizing the registration.

Change History (10)

comment:1 Changed 3 years ago by Nicklas Nordborg

In 5333:

References #1124: Pause specimen after registration

Added an option to pause specimen in the "Specimen tube registration" wizard. The paused specimen are placed in 'PSp' range of storage boxes.

If new boxes are created they are placed in the default freezer but without any section, tray or position information.

comment:2 Changed 3 years ago by Nicklas Nordborg

In 5334:

References #1124: Pause specimen after registration

The "Yellow label tracking" wizard has been updated to not include paused specimen.

comment:3 Changed 3 years ago by Nicklas Nordborg

In 5335:

References #1124: Pause specimen after registration

Updated the partition wizard so that it supports paused specimen. The assumption is that the AutoProcessing annotation is set to ReProcess when a paused specimen should be extracted.

  • The picklist has been updated to not assume that a specimen has a specific location and a paused specimen has an unknown remaining quantity.
  • The counter for number of specimen waiting for re-extraction no longer include a filter on storage box name (used to be 'Sp%').
  • In the partition form, most functionality already exists. Extracting a paused specimen is in some aspects similar to a regular re-extraction (box positions are changed) and in some aspects similar to a regular extraction (all partition fields about appearace, fat%, etc. should be active).


Most changes now rely on the 'original quantity' of a specimen being unknown the first time it is being partitioned.

Version 1, edited 3 years ago by Nicklas Nordborg (previous) (next) (diff)

comment:4 Changed 3 years ago by Nicklas Nordborg

In 5336:

References #1124: Pause specimen after registration

Added a link on the index page to a new wizard for printing a protocol for storing paused specimen.

comment:5 Changed 3 years ago by Nicklas Nordborg

In 5339:

References #1124: Pause specimen after registration

Added a wizard for registering that a pused specimen has been stored. The wizard can generate a protocol for this that include specimen names and storage location. There is also the possibility to print new labels for the specimen tubes.

The registration simply sets the AutoProcessing annotation to Disable.

comment:6 Changed 3 years ago by Nicklas Nordborg

In 5340:

References #1124: Pause specimen after registration

Added support for creating storage boxes for paused specimen to the "Storage box creation wizard".

comment:7 Changed 3 years ago by Nicklas Nordborg

In 5342:

References #1124: Pause specimen after registration

Added an icon to the "Pathology referral form registration" wizard to indicate paused specimen.

comment:8 Changed 3 years ago by Nicklas Nordborg

In 5344:

References #1124: Pause specimen after registration

Added a "Settings" dialog that can be used to set a default pause option per site. The logged in user must have "Administrator" permissions in order to change the settings.

comment:9 Changed 3 years ago by Nicklas Nordborg

In 5345:

References #1124: Pause specimen after registration

The "Specimen tube registration" wizard now uses the setting for default paused sites to determine if the "Pause" option should be selected automatically. It can always be changed by the operator.

comment:10 Changed 3 years ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed
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