| 1 | "rba" |
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| 2 | |
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| 3 | // From cohortPatient.txt |
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| 4 | "Patient" |
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| 5 | "Gender" |
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| 6 | |
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| 7 | // From cohortCase.txt |
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| 8 | "Case" |
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| 9 | "Consent" |
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| 10 | "ConsentDate" |
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| 11 | |
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| 12 | // From cohortSpecimen.txt |
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| 13 | "Specimen" |
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| 14 | "BiopsyType" |
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| 15 | "SpecimenType" |
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| 16 | "linkedSpecimen" |
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| 17 | "Laterality" |
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| 18 | "ArrivalDate" |
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| 19 | "SpecimenCreated" |
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| 20 | "SamplingDateTime" |
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| 21 | "RNALaterDateTime" |
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| 22 | |
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| 23 | // From cohortStained.txt |
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| 24 | "StainedSlide" |
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| 25 | "StainedHis" |
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| 26 | "StainedHisCreated" |
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| 27 | "ScoreComplete" |
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| 28 | "ScoreInvasiveCancer" |
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| 29 | "ScoreInsituCancer" |
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| 30 | "ScoreLymphocytes" |
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| 31 | "ScoreStroma" |
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| 32 | "ScoreFat" |
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| 33 | "ScoreNormal" |
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| 34 | |
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| 35 | // From cohortLysate.txt |
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| 36 | "Lysate" |
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| 37 | "LysateCreated" |
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| 38 | "ParentQuantityUsed" |
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| 39 | "MultPieces" |
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| 40 | "PartitionDate" |
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| 41 | |
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| 42 | // From cohortRNA.txt |
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| 43 | "RNA" |
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| 44 | "QiacubeDate" |
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| 45 | "QiacubeRunNo" |
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| 46 | "NDConc" |
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| 47 | "ND260by230" |
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| 48 | "ND260by280" |
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| 49 | "RNAQC_last" |
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| 50 | |
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| 51 | // From cohortLibrary.txt |
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| 52 | "Library" |
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| 53 | "Adaptor" |
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| 54 | "LibraryCreated" |
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| 55 | "Protocol" |
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| 56 | "QubitConc" |
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| 57 | "LibraryBioplate" |
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| 58 | |
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| 59 | // From cohortSequencing.txt |
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| 60 | "Sequencer" |
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| 61 | "SequencingEndDate" |
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| 62 | |
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| 63 | // From cohortMerged.txt |
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| 64 | "MergedSequences" |
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| 65 | "MergedFlowCells" |
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| 66 | "READS" |
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| 67 | "PF_READS" |
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| 68 | "ADAPTER_READS" |
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| 69 | "PT_READS" |
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| 70 | |
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| 71 | // From cohortMasked.txt |
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| 72 | "MaskedSequences" |
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| 73 | "PM_READS" |
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| 74 | |
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| 75 | // From cohortAligned.txt |
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| 76 | "AlignedSequences" |
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| 77 | "ALIGNED_PAIRS" |
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| 78 | "READ_PAIRS_EXAMINED" |
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| 79 | "READ_PAIR_DUPLICATES" |
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| 80 | "FRACTION_DUPLICATION" |
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| 81 | |
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| 82 | // From cohortRawbioassay.txt |
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| 83 | "Rawbioassay" |
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| 84 | "Raw.data.type" |
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| 85 | "Import.date" |
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| 86 | "Array.design" |
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| 87 | |
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| 88 | // From cohortINCA.txt |
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| 89 | IncaExportDate |
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| 90 | +all INCA annotations |
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