| 1 | "rba"
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| 2 |
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| 3 | // From cohortPatient.txt
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| 4 | "Patient"
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| 5 | "Gender"
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| 6 |
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| 7 | // From cohortCase.txt
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| 8 | "Case"
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| 9 | "Consent"
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| 10 | "ConsentDate"
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| 11 |
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| 12 | // From cohortSpecimen.txt
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| 13 | "Specimen"
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| 14 | "BiopsyType"
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| 15 | "SpecimenType"
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| 16 | "linkedSpecimen"
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| 17 | "Laterality"
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| 18 | "ArrivalDate"
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| 19 | "SpecimenCreated"
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| 20 | "SamplingDateTime"
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| 21 | "RNALaterDateTime"
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| 22 |
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| 23 | // From cohortStained.txt
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| 24 | "StainedSlide"
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| 25 | "StainedHis"
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| 26 | "StainedHisCreated"
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| 27 | "ScoreComplete"
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| 28 | "ScoreInvasiveCancer"
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| 29 | "ScoreInsituCancer"
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| 30 | "ScoreLymphocytes"
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| 31 | "ScoreStroma"
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| 32 | "ScoreFat"
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| 33 | "ScoreNormal"
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| 34 |
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| 35 | // From cohortLysate.txt
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| 36 | "Lysate"
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| 37 | "LysateCreated"
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| 38 | "ParentQuantityUsed"
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| 39 | "MultPieces"
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| 40 | "PartitionDate"
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| 41 |
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| 42 | // From cohortRNA.txt
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| 43 | "RNA"
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| 44 | "QiacubeDate"
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| 45 | "QiacubeRunNo"
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| 46 | "NDConc"
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| 47 | "ND260by230"
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| 48 | "ND260by280"
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| 49 | "RNAQC_last"
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| 50 |
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| 51 | // From cohortLibrary.txt
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| 52 | "Library"
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| 53 | "Adaptor"
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| 54 | "LibraryCreated"
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| 55 | "Protocol"
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| 56 | "QubitConc"
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| 57 | "LibraryBioplate"
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| 58 |
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| 59 | // From cohortSequencing.txt
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| 60 | "Sequencer"
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| 61 | "SequencingEndDate"
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| 62 |
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| 63 | // From cohortMerged.txt
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| 64 | "MergedSequences"
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| 65 | "MergedFlowCells"
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| 66 | "READS"
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| 67 | "PF_READS"
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| 68 | "ADAPTER_READS"
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| 69 | "PT_READS"
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| 70 |
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| 71 | // From cohortMasked.txt
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| 72 | "MaskedSequences"
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| 73 | "PM_READS"
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| 74 |
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| 75 | // From cohortAligned.txt
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| 76 | "AlignedSequences"
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| 77 | "ALIGNED_PAIRS"
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| 78 | "READ_PAIRS_EXAMINED"
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| 79 | "READ_PAIR_DUPLICATES"
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| 80 | "FRACTION_DUPLICATION"
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| 81 |
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| 82 | // From cohortRawbioassay.txt
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| 83 | "Rawbioassay"
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| 84 | "Raw.data.type"
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| 85 | "Import.date"
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| 86 | "Array.design"
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| 87 |
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| 88 | // From cohortINCA.txt
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| 89 | IncaExportDate
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| 90 | +all INCA annotations
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