Changes between Version 57 and Version 58 of se.lu.onk.IlluminaSNPNormalization


Ignore:
Timestamp:
Aug 25, 2011, 10:12:31 AM (7 years ago)
Author:
markus
Comment:

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  • se.lu.onk.IlluminaSNPNormalization

    v57 v58  
    66
    77=== News ===
     8
     9 * Aug. 25, 2011. Added support for additional beadchips. tQN normalized cluster files for humanOmni2_5M-quad and humanOmniExpress based on Illumina's !HapMap data sets have been released. Download cluster files for [http://cbbp.thep.lu.se/~markus/software/tQN/humanOmni2_5M-quad_tQN_clusters.zip?format=raw humanOmni2_5M-quad] and [http://cbbp.thep.lu.se/~markus/software/tQN/humanOmniExpress_tQN_clusters.zip?format=raw humanOmniExpress]. See special note for these platforms under download tQN below.
     10
    811
    912 * Sept. 29, 2009. Added support for additional beadchip. tQN normalized cluster file for human1M-omnia based on Illumina's !HapMap data set has been released. Download [http://cbbp.thep.lu.se/~markus/software/tQN/human1M-omnia_tQN_clusters.zip?format=raw here].
     
    3740
    3841[http://cbbp.thep.lu.se/~markus/software/tQN/human1M-omnia_tQN_clusters.zip?format=raw Download tQN cluster file for human1M-omnia]. This additional cluster file is not part of the tQN-1.1.2 release. Unzip and put the resulting txt-file in the subdirectory ''lib'' in your tQN installation if you want to use tQN with human1M-omnia beadchips.   
     42
     43[http://cbbp.thep.lu.se/~markus/software/tQN/humanOmni2_5M-quad_tQN_clusters.zip?format=raw Download tQN cluster file for humanOmni2_5M-quad]. This additional cluster file is not part of the tQN-1.1.2 release. Unzip and put the resulting txt-file in the subdirectory ''lib'' in your tQN installation if you want to use tQN with humanOmni2_5-quad beadchips. Special note: We have observed considerable assymetry in BAF estimates with this platform. In our experience tQN improves data from this platform but not to the same extent as with earlier beadchips.   
     44
     45[http://cbbp.thep.lu.se/~markus/software/tQN/humanOmniExpress_tQN_clusters.zip?format=raw Download tQN cluster file for humanOmniExpress]. This additional cluster file is not part of the tQN-1.1.2 release. Unzip and put the resulting txt-file in the subdirectory ''lib'' in your tQN installation if you want to use tQN with humanOmniExpress beadchips. Special note: We have observed considerable assymetry in BAF estimates with this platform. In our experience tQN improves data from this platform but not to the same extent as with earlier beadchips.   
    3946
    4047=== Supplemental data ===