Changes between Version 24 and Version 25 of se.lu.onk.BAFsegmentation


Ignore:
Timestamp:
Oct 17, 2008, 4:33:44 PM (9 years ago)
Author:
markus
Comment:

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  • se.lu.onk.BAFsegmentation

    v24 v25  
    77''Genome Biology'' '''9''':R136 (2008)[[BR]]
    88[http://genomebiology.com/2008/9/9/R136/abstract Abstract]
     9[http://genomebiology.com/2008/9/9/R136 Full text]
     10
     11=== News ===
     12
     13 * Oct. 17, 2008. BAFsegmentation 1.1.0 released. New features include:
     14   * Improved plotting, including a new across assays plot of regions of allelic imbalance for each chromosome and whole genome plots for each assay.
     15   * Improved removal of noisy and non-informative homozygous SNPs.
     16   * Support for segmenting BAF data normalized with [wiki:se.lu.onk.IlluminaSNPNormalization tQN] (tQN version 1.1.0 or higher).
     17
     18=== Future plans ===
     19
     20 * Adaptation of BAFsegmentation to samples having 100% tumor content for example cell-lines.
     21 * Integration of log R ratio into calling of regions and their type.
    922
    1023=== License ===
     
    1427=== Download BAFsegmentation ===
    1528
    16 [http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.0.0.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.0.0).]
     29[http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.1.0.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.1.0).]
    1730
    1831=== Supplemental Data ===
     
    2437
    2538=== How to use BAFsegmentation ===
     39
     40''Recommendations''
     41 For Infinium data, we recommend using BAFsegmentation with data normalized using
    2642
    2743''Requirements''