Changes between Version 14 and Version 15 of se.lu.onk.BAFsegmentation

Timestamp:

Sep 17, 2008, 12:50:08 PM (16 years ago)

Author:

markus

Comment:

--

se.lu.onk.BAFsegmentation

@@ -14 +14 @@
 === Download BAFsegmentation ===
 
-The method will be downloadable as a stand-alone version soon.
+[http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.0.0.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.0.0)]
 
 === Supplemental Data ===
@@ -46 +46 @@
 
 ''Input data format''
-  BAFsegmentation is applied to data exported from !BeadStudio. For a set of samples, the file exported from !BeadStudio should be tab-delimited in the following format:
+  BAFsegmentation is applied to data for a set of samples in a file that should be tab-delimited in the following format:
   ||Name||Chr||Position||sample1.B Allele Freq||sample1.Log R Ratio||sample2.B Allele Freq||sample2.Log R Ratio||sample3.B Allele Freq||sample3.Log R Ratio||...|| 
   ||rs12354060||1||10004||1||0.110391||1||-0.05188531||1||0.07706165||...||
@@ -52 +52 @@
   ||...||...||...||...||...||...||...||...||...||...||
 
-  The data extracted from !BeadStudio needs to be split into a separate file for each sample using the script ''split_beadstudio_samples.pl''.
+  For Illumina arrays data can be exported in this format directly from !BeadStudio. The data need to be split into a separate file for each sample using the script ''split_samples.pl''.
 
   {{{  
-    perl split_beadstudio_samples.pl --beadstudio_file=example/example_beadstudio_data.txt
+    perl split_samples.pl --data_file=example/example_beadstudio_data.txt
   }}}
   where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above.