Changes between Version 12 and Version 13 of se.lu.onk.BAFsegmentation

Timestamp:

Sep 17, 2008, 11:40:19 AM (16 years ago)

Author:

markus

Comment:

--

se.lu.onk.BAFsegmentation

@@ -15 +15 @@
 
 The method will be downloadable as a stand-alone version soon.
+
+=== Supplemental Data ===
+
+ * The plots referred to in additional data file 4 in the manuscript are available [http://cbbp.thep.lu.se/~markus/publications/papers/BAFsegmentation_supplemental_data.zip here].
+ * The simulated data set used in the publication is available [http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/SimulatedTumorData.zip here].
+ * Infinium data for four matched tumor-normal pairs and a dilution series of a tumor cell line mixed with its paired normal cell line are available in NCBI's Gene Expression Omnibus with accession [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11976 GSE11976].
+
 
 === How to use BAFsegmentation ===
@@ -64 +71 @@
   This command will perform BAFsegmentation on the samples in the BAFsegmentation subdirectory ''extracted'' that are specified in the file ''sample_names.txt''. If you want to perform BAFsegmentation on a subset of samples you can edit ''sample_names.txt'' accordingly. The segmented data is stored in the BAFsegmentation subdirectory ''segmented''. 
 
-=== Supplemental Data ===
-
- * The plots referred to in additional data file 4 in the manuscript are available [http://cbbp.thep.lu.se/~markus/publications/papers/BAFsegmentation_supplemental_data.zip here].
- * The simulated data set used in the publication is available [http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/SimulatedTumorData.zip here]
- * Infinium data for four matched tumor-normal pairs and a dilution series of a tumor cell line mixed with its paired normal cell line are available in NCBI's Gene Expression Omnibus with accession [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11976 GSE11976].
-
 === Contact ===