Reggie extension for BASE

This package is an extension package to BASE that makes it easier to register biosources and samples.

Documentation

• The README​ contains information about this package, how to install it and how to compile it.

License

​GNU General Public License version 3.

Download

Version	Revision	Date	Binary (tar.gz)	BASE Version	Special notes
2.6	1664	May 22, 2012	reggie-2.6.tar.gz​ (246kB)	3.1.0 or later		changelog
2.5	1632	April 27, 2012	reggie-2.5.tar.gz​ (212kB)	3.1.0 or later	update notes	changelog
2.4	1618	April 25, 2012	reggie-2.4.tar.gz​ (193kB)	3.0.0 or later		changelog
2.3	1535	February 14, 2012	reggie-2.3.tar.gz​ (124kB)	3.0.0 or later		changelog
2.2	1528	January 25, 2012	reggie-2.2.tar.gz​ (122kB)	3.0.0 or later		changelog
2.1	1506	January 18, 2012	reggie-2.1.tar.gz​ (102kB)	3.0.0 or later		changelog
2.0.1	1486	November 30, 2011	reggie-2.0.1.tar.gz​ (89kB)	3.0.0 or later		changelog
2.0	1465	November 14, 2011	reggie-2.0.tar.gz​ (89kB)	3.0.0 or later		changelog
1.6	1462	November 14, 2011	reggie-1.6.tar.gz​ (85kB)	2.17.1 or later		changelog
1.5	1377	June 17, 2011	reggie-1.5.tar.gz​ (66kB)	2.17.1 or later		changelog
1.4	1364	May 16, 2011	reggie-1.4.tar.gz​ (58kB)	2.17.1 or later		changelog
1.3	1356	April 28, 2011	reggie-1.3.tar.gz​ (72kB)	2.16.0 or later		changelog
1.2	1339	April 11, 2011	reggie-1.2.tar.gz​ (63kB)	2.16.0 or later		changelog
1.1	1323	March 21, 2011	reggie-1.1.tar.gz​ (43kB)	2.16.0 or later		changelog
1.0	1314	March 7, 2011	reggie-1.0.tar.gz​ (42kB)	2.16.0 or later		changelog

The latest development (maybe unstable; do not use on a production server) revision can be checked out from the repository using the following command:

svn co http://baseplugins.thep.lu.se/svn/extensions/net.sf.basedb.reggie/trunk reggie-devel

Contribute

After making modifications to the source code, compose a clear and concise log message to describe those changes and the reasons for them. Then, send an email to the developers list containing your log message and the output of svn diff (from the top of your subversion working copy). If the community members consider your changes acceptable, someone who has commit privileges will add your changes to the public source code tree. Recall that permission to directly commit changes to the repository is granted on merit - if you demonstrate comprehension of subversion, programming competency, and a team spirit, you will likely be awarded that permission.

Todo

#413

Handle re-running a sample on Caliper with Hi-Sense option

#510

Consistent use of terms in the lab protocols and Reggie interface

#532

reggie QC wizard for additional QC measurements outside of routine

#584

Make it possible to use different volumes for different RNA in Create mRNA plate wizard

#695

New reporter annotations

#752

Schedule new RNAQC from Flagged RNA wizard

#919

Include information about deliverd reports in case summary

#1211

Release exporter changes due to TMA specimen importer

#1311

Changes in frozen tissue importer due to changes in referral forms

#1575

Impute genotypes from OncoArray data

#1576

Calculate Polygenic Risk Scores (PRS)

#1581

Convert all raw bioassay items to derived bioassays

#1583

Improve release exporter scripts