wiki:net.sf.basedb.reggie/notes41

Version 2 (modified by Nicklas Nordborg, 5 years ago) (diff)

--

Updating to Reggie 4.1

1. Install new pipeline script

The nextseq_status.sh script is a new script that is used by the auto-analyze functionality to retrieve information about how the sequencing is going. It works with NextSeq sequencing data only. Download the script from http://baseplugins.thep.lu.se/browser/other/pipeline/trunk and save it on the computation cluster in the location specified by the <pipeline-scripts><path> setting in reggie-config.xml.