Changes between Version 4 and Version 5 of net.sf.basedb.reggie/notes415

Timestamp:

Feb 22, 2018, 9:37:40 AM (6 years ago)

Author:

Nicklas Nordborg

Comment:

More details about deleting alignments

net.sf.basedb.reggie/notes415

@@ -24 +24 @@
 === Remove existing Hisat alignments ===
 
-Use the '''Delete unmasked Hisat alignments''' wizard to delete existing Hisat alignments. There is no masking step before the alignment, and the genotyping is done with a shorter list (51) SNPs. Do not attempt to run the '''Genotype quality control''' wizard before the old alignments have been removed since this may lead to unpredictable results.
+Use the '''Delete unmasked Hisat alignments''' wizard to delete existing Hisat alignments and files (in the BASE filesystem) that are related to them. There is no masking step before the alignment, and the genotyping is done with a shorter list (51) SNPs. 
+
+Use the '''Stray files wizard''' to delete files from the file server.
+
+Do not attempt to run the '''Genotype quality control''' wizard before the old alignments have been removed since this may lead to unpredictable results.
 
 === The QC_GenoTypeHET annotation type is no longer used ===