Changes between Version 3 and Version 4 of net.sf.basedb.reggie/notes415


Ignore:
Timestamp:
Feb 21, 2018, 11:51:57 AM (6 years ago)
Author:
Nicklas Nordborg
Comment:

Update note related to #1015

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  • net.sf.basedb.reggie/notes415

    v3 v4  
    2424=== Remove existing Hisat alignments ===
    2525
    26 Existing Hisat alignments should be removed. There is no masking step before the alignment, and the genotyping is done with a shorter list (51) SNPs. Do not attempt to run the "Genotype quality control" wizard before the old alignments have been removed since this may lead to unpredictable results.
     26Use the '''Delete unmasked Hisat alignments''' wizard to delete existing Hisat alignments. There is no masking step before the alignment, and the genotyping is done with a shorter list (51) SNPs. Do not attempt to run the '''Genotype quality control''' wizard before the old alignments have been removed since this may lead to unpredictable results.
    2727
    2828=== The QC_GenoTypeHET annotation type is no longer used ===