Version 1 (modified by Nicklas Nordborg, 6 years ago) (diff)

Update notes for Reggie 3.2

Updating to Reggie 3.2

1. Picard and pipeline scripts should be updated

Ticket #742 (Detect tiles with empty barcode files) will not work without upgrading to Picard 1.128-4 on the Open grid cluster. See for downloading and more information.

Note that this Picard version no longer ships each tool as a separate JAR file. All tools are packages together in picard.jar. Due to this change the command line to start Picard has changed (see and the pipeline scripts must also be updated (trunk revision later than 3099). Note that the new pipeline scripts doesn't work with earlier version of Picard.

2. New role: PrepCurator

This role is needed to use the Flagged RNA wizard (#455). Assign users to this role as needed.