| 1 | = Updating to Reggie 2.15 = |
| 2 | |
| 3 | The following items should be performed after updating to Reggie 2.15. |
| 4 | |
| 5 | '''NOTE! The procedures in this document are preliminary and may change before the final release! ''' |
| 6 | |
| 7 | === 1. Remove incorrectly registered `SequencingRun` items === |
| 8 | |
| 9 | All `SequencingRun` items registered with Reggie 2.14 are incorrectly registered. The easiest way to fix this is to remove all existing |
| 10 | `SequencingRun` and use Reggie 2.15 to redo the registration. The following steps should work: |
| 11 | |
| 12 | |
| 13 | 1. Go to '''View->Derived bioassays'''. |
| 14 | 2. Make an export of all columns in case comments, annotations and other information is needed when re-registering. |
| 15 | 3. Select all `SequencingRun` items. |
| 16 | 4. Use '''Set owner''' to take ownership of all selected items (to make it easier to delete them from the trashcan). |
| 17 | 5. Click '''Delete'''. This should put all selected `SequencingRun` items in the traschcan. |
| 18 | 6. Go to '''View->Trashcan''' and finalize the deletion. |
| 19 | |
| 20 | === 2. Redo the sequencing startup registration === |
| 21 | |
| 22 | The delete information about `SequencingRun` items need to be re-registered using the '''Register sequencing started''' wizard. |
| 23 | The wizard should be completed once for each flow cell (no pair-wise registration). |
| 24 | |
| 25 | 1. Go to '''Extensions->Reggie''' and start the '''Register sequencing started''' wizard. |
| 26 | 2. '''Operator''' and '''Comments''' can be copied from the information that was exported in step 1.2 above. |
| 27 | 3. All other information is retreived from the `runParameters.xml` file that is created by the !HiSeq for each sequencing run. |
| 28 | 4. Finish the wizard and repeat for each flow cell. |
| 29 | |
| 30 | The '''Register sequencing ended''' and '''Confirm sequencing completed''' wizards can then be used to finalize the registration for each of the sequencing runs. |