Changes between Version 7 and Version 8 of net.sf.basedb.reggie.notes213
- Timestamp:
- Oct 4, 2013, 12:50:03 PM (10 years ago)
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net.sf.basedb.reggie.notes213
v7 v8 1 1 = Updating to Reggie 2.13 = 2 2 3 '''IMPORTANT! ''' Item 1 must be done '''BEFORE''' installing the update. Items 2-4 can be done after upgrading.3 The following items should be performed after updating to Reggie 2.13. 4 4 5 6 === 1. Make sure that pools have been registered === 7 8 Make sure that all created pools have been completed in the lab and registered. Eg. the '''Lab protocols for pooling''' and '''Register pooled libraries''' wizards should display (0) items waiting for registration. Otherwise the lab protocols will show incorrect mixing values. 9 10 === 2. Flag some libraries and their parent RNA item === 5 === 1. Flag some libraries and their parent RNA item === 11 6 12 7 Due to a bug (see #508), libraries which got a Qubit concentration measurement of '''0 ng/µl''' have been left in a dead end state. To ensure that new RNA is extracted in the future, a flag must be set manually and the parent RNA items must be added to the '''Flagged RNA''' list. … … 18 13 5. Check that the selection list in the '''Create pooled libraries''' no longer include already registered library plates. 19 14 20 === 3. Fix !PoolConc values for all *.dil extracts ===15 === 2. Fix !PoolConc values for all *.dil extracts === 21 16 22 17 Due to a bug (see #507), all `*.dil` extracts have been registered with an incorrect value for the '''!PoolConc''' annotation. This need to be fixed by a manual export/import procedure. … … 30 25 7. Use the annotation importer to update the '''!PoolConc''' values. 31 26 32 === 4. Copy missing consent information from blood to case items ===27 === 3. Copy missing consent information from blood to case items === 33 28 34 29 Due to a bug (see #511) consent information that has already been registered on blood samples with '''!BloodSample=!PreNeo''' has not been copied to cases that was registered at a later time. To fix this a manual crossmatch is required to find which cases are missing consent information that is available on a blood item.