Changes between Version 5 and Version 6 of net.sf.basedb.reggie.notes213

Timestamp:

Oct 3, 2013, 9:36:15 AM (11 years ago)

Author:

Nicklas Nordborg

Comment:

Adding note about fixing missing consent annotations on cases

net.sf.basedb.reggie.notes213

@@ -28 +28 @@
  6. Save the results as a tab-separated file and upload it to BASE.
  7. Use the annotation importer to update the '''!PoolConc''' values.
+
+=== 4. Copy missing consent information from blood to case items ===
+
+Due to a bug (see #511) consent information that has already been registered on blood samples with '''!BloodSample=!PreNeo''' has not been copied to cases that was registered at a later time. To fix this a manual crossmatch is required to find which cases are missing consent information that is available on a blood item.
+
+ 1. Find all cases with missing consent information. Export a list with the case names to a tab-separated file.
+ 2. Find all '''!PreNeo''' blood items that has consent information. Export the blood name, '''Consent''' and '''!ConsentDate''' columns to a tab-separated file.
+ 3. Use a spreadsheet program to crossmatch the case names with the blood names.
+ 4. Copy the found consent information to new columns in the list with cases.
+ 5. Save the result as a tab-separated file and upload it to BASE.
+ 6. Use the annotation importer to import values for '''Consent''' and '''!ConsentDate''' to the cases.