Changes between Version 7 and Version 8 of net.sf.basedb.reggie.notes213


Ignore:
Timestamp:
Oct 4, 2013, 12:50:03 PM (6 years ago)
Author:
Nicklas Nordborg
Comment:

Removing section about the need to register pools since it is no longer required

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  • net.sf.basedb.reggie.notes213

    v7 v8  
    11= Updating to Reggie 2.13 =
    22
    3 '''IMPORTANT! ''' Item 1 must be done '''BEFORE''' installing the update. Items 2-4 can be done after upgrading.
     3The following items should be performed after updating to Reggie 2.13.
    44
    5 
    6 === 1. Make sure that pools have been registered ===
    7 
    8 Make sure that all created pools have been completed in the lab and registered. Eg. the '''Lab protocols for pooling''' and '''Register pooled libraries''' wizards should display (0) items waiting for registration. Otherwise the lab protocols will show incorrect mixing values.
    9 
    10 === 2. Flag some libraries and their parent RNA item ===
     5=== 1. Flag some libraries and their parent RNA item ===
    116
    127Due to a bug (see #508), libraries which got a Qubit concentration measurement of '''0 ng/µl''' have been left in a dead end state. To ensure that new RNA is extracted in the future, a flag must be set manually and the parent RNA items must be added to the '''Flagged RNA''' list.
     
    1813 5. Check that the selection list in the '''Create pooled libraries''' no longer include already registered library plates.
    1914
    20 === 3. Fix !PoolConc values for all *.dil extracts ===
     15=== 2. Fix !PoolConc values for all *.dil extracts ===
    2116
    2217Due to a bug (see #507), all `*.dil` extracts have been registered with an incorrect value for the '''!PoolConc''' annotation. This need to be fixed by a manual export/import procedure.
     
    3025 7. Use the annotation importer to update the '''!PoolConc''' values.
    3126
    32 === 4. Copy missing consent information from blood to case items ===
     27=== 3. Copy missing consent information from blood to case items ===
    3328
    3429Due to a bug (see #511) consent information that has already been registered on blood samples with '''!BloodSample=!PreNeo''' has not been copied to cases that was registered at a later time. To fix this a manual crossmatch is required to find which cases are missing consent information that is available on a blood item.