Changes between Version 9 and Version 10 of net.sf.basedb.reggie.notes213


Ignore:
Timestamp:
Oct 23, 2013, 9:24:40 AM (5 years ago)
Author:
Nicklas Nordborg
Comment:

Added not about fixing missing QiaCube? annotation on FlowThrough? items

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  • net.sf.basedb.reggie.notes213

    v9 v10  
    3535 5. Save the result as a tab-separated file and upload it to BASE.
    3636 6. Use the annotation importer to import values for '''Consent''' and '''!ConsentDate''' to the cases.
     37
     38=== 4. Copy missing !QiaCube annotations to !FlowThrough items ===
     39
     40Due to a bug (see #520) the four !QiaCube annotations (!QiacubeDate !QiacubeOperator !QiacubePosition !QiacubeRunNo) was never set on !FlowThrough items. The values are available on related RNA and DNA items, so it is easy to fix using a batch import.
     41
     42 1. List all RNA extracts. Export a list with the names and four annotation to a tab-separated file.
     43 2. Edit the file and replace '''`.r`''' in all names with '''`.f`'''.
     44 3. Upload the file to BASE and use the annotation importer to import !QiaCube annotation to the !FlowThrough items.