= Normalization package for BASE = This package contains different kinds of normalization plug-ins, each one implementing a specific algorithm.[[BR]] The plug-ins in this package require BASE 2.7.0 or later.[[BR]] Normalization algorithms supported in this package: * Average normalization * Quantile normalization More about the plug-ins and their algorithms can be found in the [source:/plugins/base2/net.sf.basedb.normalizers/tags/1.0/README README] file. = Documentation = == Stable release == [source:/plugins/base2/net.sf.basedb.normalizers/tags/1.0/README README] contains general information about the plug-ins in this package.[[BR]] [source:/plugins/base2/net.sf.basedb.normalizers/tags/1.0/INSTALL INSTALL] contains installation instructions. === Beta release === [source:/plugins/base2/net.sf.basedb.normalizers/tags/1.1-beta2/README README] contains general information about the plug-ins in this package.[[BR]] [source:/plugins/base2/net.sf.basedb.normalizers/tags/1.1-beta2/INSTALL INSTALL] contains installation instructions. = License = The Normalization package for BASE package is an open source project and is available free of charge under the [http://www.gnu.org/copyleft/gpl.html GNU General Public License version 3]. = Download = || '''Version''' || '''Revision''' || '''Date''' || '''Binary (tar.gz)''' || '''BASE Version'''* || || || 1.1-beta2 || 2177 || December 12, 2013 || [attachment:wiki:net.sf.basedb.normalizers:normalization-plugins-1.1-beta2.tar.gz?format=raw normalization-plugins-1.1-beta2.tar.gz] ([attachment:wiki:net.sf.basedb.normalizers:normalization-plugins-1.1-beta2.tar.gz.MD5?format=raw MD5]) (165kB) || 3.2.4 || [query:"group=resolution&milestone=Normalization package v1.1&order=priority" changelog] || || 1.1-beta || 1455 || November 3, 2011 || [attachment:wiki:net.sf.basedb.normalizers:normalization-plugins-1.1-beta.tar.gz?format=raw normalization-plugins-1.1-beta.tar.gz] (157kB) || 3.0 || [query:"group=resolution&milestone=Normalization package v1.1&order=priority" changelog] || || 1.0 || 934 || December 18, 2008 || [attachment:wiki:net.sf.basedb.normalizers:normalization-plugins-1.0.tar.gz?format=raw normalization-plugins-1.0.tar.gz] ([attachment:wiki:net.sf.basedb.normalizers:normalization-plugins-1.0.tar.gz.MD5?format=raw MD5]) (34kB) || 2.7 || [query:"status=closed&group=resolution&milestone=Normalization package v1.0&order=priority" changelog] || '''*''' In general, each release works with the specified and later BASE versions, except that releases for BASE 2 do not work with BASE 3. '''Source code''' is included in the downloads, but can also retrieved from the subversion repository. Use the following command to get source code for the 1.0 version: `svn co http://baseplugins.thep.lu.se/svn/extensions/net.sf.basedb.normalizers/tags/1.0 normalizers-1.0` The latest development (''maybe unstable; do not use on a production server'') revision can be checked out from the repository using the following command: `svn co http://baseplugins.thep.lu.se/svn/extensions/net.sf.basedb.normalizers/trunk normalizers-dev` === Contribute === After making modifications to the source code, compose a clear and concise log message to describe those changes and the reasons for them. Then, send an email to the developers list containing your log message and the output of svn diff (from the top of your subversion working copy). If the community members consider your changes acceptable, someone who has commit privileges will add your changes to the public source code tree. Recall that permission to directly commit changes to the repository is granted on merit - if you demonstrate comprehension of subversion, programming competency, and a ''team spirit'', you will likely be awarded that permission. === Feedback === Please use the [http://base.thep.lu.se/wiki/MailingLists BASE mailing lists] for discussions about the normalization plug-ins. You have to login to this trac environment to be able to report bugs, enhancement ideas, and feature requests. Login with userid '''base''' and password '''base''' and use the [http://baseplugins.thep.lu.se/newticket ticket reporting system]. === TODO === ''Assigned tickets:'' [[TicketQuery(status=assigned&component=net.sf.basedb.normalizers)]] ''Open but not assigned tickets:'' [[TicketQuery(status=new|reopened&component=net.sf.basedb.normalizers)]] [query:status!=closed&component=net.sf.basedb.normalizers&order=priority All open tickets] === Project statistics === [http://dev.thep.lu.se/svndigest svndigest] generated [http://cbbp.thep.lu.se/~jari/svndigest/baseplugins/classic/all/total/plugins/base2/net.sf.basedb.normalizers/trunk/index.html project statistics].