Changes between Version 11 and Version 12 of net.sf.basedb.meludi.notes1_3


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Timestamp:
Jul 23, 2015, 9:53:06 AM (5 years ago)
Author:
olle
Comment:

Updated section 2 regarding marking created start lists as processed.

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  • net.sf.basedb.meludi.notes1_3

    v11 v12  
    6969The created start item lists can now be inspected using the "Lab tracking protocol/report copy" wizard.
    7070
    71 Storage of the start plate creation date in an item list annotation was chosen, as creation events are not defined for item lists. Since a set creation date for a start plate in MeLuDI v1.2.* indicates that the plate has been processed, i.e. that concentration and delta-Ct values have been registered for MeLuDI DNA/RNA, it might be argued that annotation "`SamplePrepListIsProcessed`" for the created start list should be set to `true`, in order to indicate that the start list has been processed. However, this is normally only true for converted item lists without extra material, since concentration and delta-Ct values were only registered for MeLuDI items in v1.2.*, but not for extra material. Setting the value of annotation "`SamplePrepListIsProcessed`" to `true`, would have prevented using the DNA/RNA registration/quantification wizard to register the latter values for the start list.
     71Storage of the start plate creation date in an item list annotation was chosen, as creation events are not defined for item lists. Since a set creation date for a start plate in MeLuDI v1.2.* indicates that the plate has been processed, i.e. that concentration and delta-Ct values have been registered for MeLuDI DNA/RNA, the created start list should also be marked as processed, by setting value of Boolean annotation "`SamplePrepListIsProcessed`" to `true`, if the start list does not contain any extra material. However, this should not be done for start lists with extra material, since concentration and delta-Ct values were only registered for MeLuDI items in v1.2.*, but not for extra material. Setting the value of annotation "`SamplePrepListIsProcessed`" to `true`, would prevent the start list from being opened in the "DNA/RNA registration/quantification" wizard, in order to register concentrations and delta-Ct values for the extra material.
    7272
    7373== 3. (Optional) Register quantification/QC values for extra material items