Changes between Version 7 and Version 8 of net.sf.basedb.meludi.background_software_info


Ignore:
Timestamp:
Dec 10, 2015, 9:08:49 AM (5 years ago)
Author:
olle
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • net.sf.basedb.meludi.background_software_info

    v7 v8  
    2121
    2222=== 1.5 Pipeline management ===
    23 MeLuDI, like Reggie, is intended to simplify keeping track on what items are of interest in each step of the processing pipeline, e.g. by only including those item in selection menus for a particular step. In some cases, this is simple, since child items are created at registration in several steps, and will then be input items in the next step. One case where the details of MeLuDI keeps track of what steps an item has passed, is when you want to undo a step by deleting child items created in the last step, from the BASE GUI. Sometimes this is not enough to allow you to redo the last step in MeLuDI, since the needed items do not appear in selection menus, if the software still considers them to have passed the step in question.
     23MeLuDI, like Reggie, is intended to simplify keeping track on what items are of interest in each step of the processing pipeline, e.g. by only including those items in selection menus for a particular step. In some cases, this is simple, since child items are created at registration in several steps, and will then be input items in the next step. One case where you might be interested in the details of how MeLuDI keeps track of what steps an item has passed, is when you want to undo a step in the BASE GUI by deleting child items created in the last step. Sometimes this is not enough to allow you to redo the last step in MeLuDI, since the needed items do not appear in selection menus, if the software still considers them to have passed the step in question.
    2424
    25 ==== 1.5.1 Processed start lists ====
     25==== 1.5.1 Wizard "Lab tracking protocol for FFPE extraction": Extract source items added to start list ====
     26Extract source items (specimens or input extracts) added to a start list have their original quantity changed from `null` to 0.0. This will stop them from appearing in the extract source item selection menu, when the wizard is run again.
     27==== 1.5.2 Wizard "DNA/RNA registration/quantification": Processing a start list
     28A start list is regarded as processed, when quantification data for its extracts have been entered. This is indicated by setting value of Boolean item list annotation `Annotationtype.SAMPLE_PREP_LIST_IS_PROCESSED` to `true`.
     29==== 1.5.3 Wizard "Create new start DNA plate" Step 1: Processed start list to select DNA extracts from
     30Only processed start lists with at least one DNA extract without an FPA child extract on a library plate will appear in the start list selection menu.
     31==== 1.5.4 Wizard "Create new start DNA plate" Step 2: DNA extracts on selected processed start lists
     32Only DNA extracts without an FPA child extract on a library plate will appear in the DNA extract selection menu.