Changes between Version 33 and Version 34 of net.sf.basedb.illumina


Ignore:
Timestamp:
Nov 2, 2011, 2:41:48 PM (6 years ago)
Author:
nicklas
Comment:

Releasing Illumina plug-ins 1.7

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Unmodified
Added
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  • net.sf.basedb.illumina

    v33 v34  
    11= Illumina plug-ins package for BASE =
    22
    3 This package contains plug-ins for the Illumina platform. The plug-ins require BASE 2.15.0 or later
    4 and that you have data in the form of either:
     3This package contains plug-ins for the Illumina platform. The plug-ins require that you have data in the form of either:
    54
    65 * For expression experiments: Illumina Bead Summary (IBS) and Illumina Sentrix® Array binary manifest (BGX) files.
     
    2221= Documentation =
    2322
    24 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.6/INSTALL INSTALL] describes how to install the plug-in package. It is important that you read this document. The plug-ins require additional raw data tables and reporter annotation columns in the database before they can be used.
     23[source:/plugins/base2/net.sf.basedb.illumina/tags/1.7/INSTALL INSTALL] describes how to install the plug-in package. It is important that you read this document. The plug-ins require additional raw data tables and reporter annotation columns in the database before they can be used.
    2524
    26 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.6/README README] contains general information about the plug-ins and specific information for expressions experiments.
     25[source:/plugins/base2/net.sf.basedb.illumina/tags/1.7/README README] contains general information about the plug-ins and specific information for expressions experiments.
    2726
    28 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.6/README_PluginDetails README_PluginDetails] contains detailed information on some of the plug-ins provided by this package.
     27[source:/plugins/base2/net.sf.basedb.illumina/tags/1.7/README_PluginDetails README_PluginDetails] contains detailed information on some of the plug-ins provided by this package.
    2928
    30 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.6/README_SNP README_SNP] contains specific information for SNP experiments.
     29[source:/plugins/base2/net.sf.basedb.illumina/tags/1.7/README_SNP README_SNP] contains specific information for SNP experiments.
    3130
    32 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.6/contrib/README_beadstudio2ibs.txt README_beadstudio2ibs.txt] contains information on how to convert Illumina !BeadStudio expression projects to a format usable with this package.
     31[source:/plugins/base2/net.sf.basedb.illumina/tags/1.7/contrib/README_beadstudio2ibs.txt README_beadstudio2ibs.txt] contains information on how to convert Illumina !BeadStudio expression projects to a format usable with this package.
    3332
    3433
     
    4039= Download =
    4140
    42 || Version || Revision || Date           || Binary (tar.gz) || BASE Version || ||
    43 || 1.6     || 1266     || November 3, 2010 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.6.tar.gz?format=raw illumina-plugins-1.6.tar.gz] (129kB) || 2.16.0 or later  || [query:"status=closed&group=resolution&milestone=Illumina package v1.6&order=priority" changelog] ||
    44 || 1.5.1   || 1234     || August 25, 2010 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.5.1.tar.gz?format=raw illumina-plugins-1.5.1.tar.gz] (129kB) || 2.15.0 or later  || [query:"status=closed&group=resolution&milestone=Illumina package v1.5.1&order=priority" changelog] ||
    45 || 1.5     || 1222     || April 20, 2010 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.5.tar.gz?format=raw illumina-plugins-1.5.tar.gz] (129kB) || 2.15.0 or later  || [query:"status=closed&group=resolution&milestone=Illumina package v1.5&order=priority" changelog] ||
    46 || 1.4     || 1173     || Sep 29, 2009 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.4.tar.gz?format=raw illumina-plugins-1.4.tar.gz] (124kB) || 2.12.0 or later  || [query:"status=closed&group=resolution&milestone=Illumina package v1.4&order=priority" changelog] ||
    47 || 1.3     || 969      || Feb 25, 2009 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.3.tar.gz?format=raw illumina-plugins-1.3.tar.gz] (102kB) || 2.9.0 or later || [query:"status=closed&group=resolution&milestone=Illumina package v1.3&order=priority" changelog] ||
    48 || 1.2     || 912      || Dec 10, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.2.tar.gz?format=raw illumina-plugins-1.2.tar.gz] (95kB) || 2.9.0 or later || [query:"status=closed&group=resolution&milestone=Illumina package v1.2&order=priority" changelog] ||
    49 || 1.1     || 702      || May 23, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.1.tar.gz?format=raw illumina-plugins-1.1.tar.gz] (95kB) || 2.6.0 or later || [query:"status=closed&group=resolution&milestone=Illumina package v1.1&order=priority" changelog] ||
    50 || 1.0     || 632      || March 13, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.0.tar.gz?format=raw illumina-plugins-1.0.tar.gz] (80kB) || 2.6.0 or later || [query:"status=closed&group=resolution&milestone=Illumina package v1.0&order=priority" changelog] ||
     41|| '''Version''' || '''Revision''' || '''Date'''           || '''Binary (tar.gz)''' || '''BASE Version'''* || ||
     42|| 1.7     || 1447     || November 2, 2011 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.7.tar.gz?format=raw illumina-plugins-1.7.tar.gz] (135kB) || 3.0  || [query:"status=closed&group=resolution&milestone=Illumina package v1.6&order=priority" changelog] ||
     43|| 1.6     || 1266     || November 3, 2010 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.6.tar.gz?format=raw illumina-plugins-1.6.tar.gz] (129kB) || 2.16  || [query:"status=closed&group=resolution&milestone=Illumina package v1.6&order=priority" changelog] ||
     44|| 1.5.1   || 1234     || August 25, 2010 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.5.1.tar.gz?format=raw illumina-plugins-1.5.1.tar.gz] (129kB) || 2.15  || [query:"status=closed&group=resolution&milestone=Illumina package v1.5.1&order=priority" changelog] ||
     45|| 1.5     || 1222     || April 20, 2010 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.5.tar.gz?format=raw illumina-plugins-1.5.tar.gz] (129kB) || 2.15  || [query:"status=closed&group=resolution&milestone=Illumina package v1.5&order=priority" changelog] ||
     46|| 1.4     || 1173     || Sep 29, 2009 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.4.tar.gz?format=raw illumina-plugins-1.4.tar.gz] (124kB) || 2.12  || [query:"status=closed&group=resolution&milestone=Illumina package v1.4&order=priority" changelog] ||
     47|| 1.3     || 969      || Feb 25, 2009 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.3.tar.gz?format=raw illumina-plugins-1.3.tar.gz] (102kB) || 2.9 || [query:"status=closed&group=resolution&milestone=Illumina package v1.3&order=priority" changelog] ||
     48|| 1.2     || 912      || Dec 10, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.2.tar.gz?format=raw illumina-plugins-1.2.tar.gz] (95kB) || 2.9 || [query:"status=closed&group=resolution&milestone=Illumina package v1.2&order=priority" changelog] ||
     49|| 1.1     || 702      || May 23, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.1.tar.gz?format=raw illumina-plugins-1.1.tar.gz] (95kB) || 2.6 || [query:"status=closed&group=resolution&milestone=Illumina package v1.1&order=priority" changelog] ||
     50|| 1.0     || 632      || March 13, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.0.tar.gz?format=raw illumina-plugins-1.0.tar.gz] (80kB) || 2.6 || [query:"status=closed&group=resolution&milestone=Illumina package v1.0&order=priority" changelog] ||
    5151
    52 Source code can be downloaded from the subversion repository. Use the following command to get source code for the 1.6 version:
     52'''*''' In general, each release works with the specified and later BASE versions, except that releases for BASE 2 do not work with BASE 3.
    5353
    54  `svn co http://baseplugins.thep.lu.se/svn/plugins/base2/net.sf.basedb.illumina/tags/1.6 illumina-1.6`
     54'''Source code''' can be downloaded from the subversion repository. Use the following command to get source code for the 1.7 version:
     55
     56 `svn co http://baseplugins.thep.lu.se/svn/plugins/base2/net.sf.basedb.illumina/tags/1.7 illumina-1.7`
    5557
    5658
    5759The latest development (''maybe unstable; do not use on a production server'') revision can be checked out from the repository using the following command:
    5860
    59  `svn co http://baseplugins.thep.lu.se/svn/plugins/base2/net.sf.basedb.illumina/trunk illumina-devel`
     61 `svn co http://baseplugins.thep.lu.se/svn/plugins/base2/net.sf.basedb.illumina/trunk illumina-dev`
    6062
    6163or [source:plugins/base2/net.sf.basedb.illumina/trunk browse the svn repository].