Changes between Version 25 and Version 26 of net.sf.basedb.illumina


Ignore:
Timestamp:
Sep 29, 2009, 2:05:28 PM (11 years ago)
Author:
Jari Häkkinen
Comment:

Releasing Illumina package v1.4

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  • net.sf.basedb.illumina

    v25 v26  
    11= Illumina plug-ins package for BASE =
    22
    3 This package contains plug-ins for the Illumina platform. The plug-ins require BASE 2.9.0 or later
     3This package contains plug-ins for the Illumina platform. The plug-ins require BASE 2.12.0 or later
    44and that you have data in the form of either:
    55
     
    1212 * BGX feature importer: Create array designs from BGX files
    1313 * BGX reporter importer: Import reporter annotations from BGX files
    14  * Detection P-value calculation ([source:/plugins/base2/net.sf.basedb.illumina/trunk/README_PluginDetails doc]): Illumina !BeadStudio [http://www.genomecenter.ucdavis.edu/expression_analysis/documents/illumina_normalization_081201.pdf detection P-value calculations]
     14 * Detection P-value calculation ([source:/plugins/base2/net.sf.basedb.illumina/tags/1.4/README_PluginDetails doc]): Illumina !BeadStudio [http://www.genomecenter.ucdavis.edu/expression_analysis/documents/illumina_normalization_081201.pdf detection P-value calculations]
    1515
    1616SNP data plugins in this package:
     
    2121= Documentation =
    2222
    23 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.3/INSTALL INSTALL] describes how to install the plug-in package. It is important that you read this document. The plug-ins require additional raw data tables and reporter annotation columns in the database before they can be used.
     23[source:/plugins/base2/net.sf.basedb.illumina/tags/1.4/INSTALL INSTALL] describes how to install the plug-in package. It is important that you read this document. The plug-ins require additional raw data tables and reporter annotation columns in the database before they can be used.
    2424
    25 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.3/README README] contains general information about the plug-ins and specific information for expressions experiments.
     25[source:/plugins/base2/net.sf.basedb.illumina/tags/1.4/README README] contains general information about the plug-ins and specific information for expressions experiments.
    2626
    27 [source:/plugins/base2/net.sf.basedb.illumina/trunk/README_PluginDetails README_PluginDetails] contains detailed information on some of the plug-ins provided by this package.
     27[source:/plugins/base2/net.sf.basedb.illumina/tags/1.4/README_PluginDetails README_PluginDetails] contains detailed information on some of the plug-ins provided by this package.
    2828
    29 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.3/README_SNP README_SNP] contains specific information for SNP experiments.
     29[source:/plugins/base2/net.sf.basedb.illumina/tags/1.4/README_SNP README_SNP] contains specific information for SNP experiments.
    3030
    31 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.3/contrib/README_beadstudio2ibs.txt README_beadstudio2ibs.txt] contains information on how to convert Illumina !BeadStudio expression projects to a format usable with this package.
     31[source:/plugins/base2/net.sf.basedb.illumina/tags/1.4/contrib/README_beadstudio2ibs.txt README_beadstudio2ibs.txt] contains information on how to convert Illumina !BeadStudio expression projects to a format usable with this package.
    3232
    3333
     
    4040
    4141|| Version || Revision || Date           || Binary (tar.gz) || BASE Version ||
     42|| 1.4     || 1170     || Sep 29, 2009 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.4.tar.gz?format=raw illumina-plugins-1.4.tar.gz] (124kB) || 2.12.0 or later ||
    4243|| 1.3     || 969      || Feb 25, 2009 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.3.tar.gz?format=raw illumina-plugins-1.3.tar.gz] (102kB) || 2.9.0 or later ||
    4344|| 1.2     || 912      || Dec 10, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.2.tar.gz?format=raw illumina-plugins-1.2.tar.gz] (95kB) || 2.9.0 or later ||
     
    4546|| 1.0     || 632      || March 13, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.0.tar.gz?format=raw illumina-plugins-1.0.tar.gz] (80kB) || 2.6.0 or later ||
    4647
    47 Source code can be downloaded from the subversion repository. Use the following command to get source code for the 1.3 version:
     48Source code can be downloaded from the subversion repository. Use the following command to get source code for the 1.4 version:
    4849
    49  `svn co http://baseplugins.thep.lu.se/svn/plugins/base2/net.sf.basedb.illumina/tags/1.3 illumina-1.3`
     50 `svn co http://baseplugins.thep.lu.se/svn/plugins/base2/net.sf.basedb.illumina/tags/1.4 illumina-1.4`
    5051
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