Changes between Version 19 and Version 20 of net.sf.basedb.illumina


Ignore:
Timestamp:
Feb 25, 2009, 9:36:14 AM (15 years ago)
Author:
Martin Svensson
Comment:

Releasing Illumina package 1.3

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  • net.sf.basedb.illumina

    v19 v20  
    2121= Documentation =
    2222
    23 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.2/INSTALL INSTALL] describes how to install the plug-in package. It is important that you read this document. The plug-ins require additional raw data tables and reporter annotation columns in the database before they can be used.
     23[source:/plugins/base2/net.sf.basedb.illumina/tags/1.3/INSTALL INSTALL] describes how to install the plug-in package. It is important that you read this document. The plug-ins require additional raw data tables and reporter annotation columns in the database before they can be used.
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    25 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.2/README README] contains general information about the plug-ins and specific information for expressions experiments.
     25[source:/plugins/base2/net.sf.basedb.illumina/tags/1.3/README README] contains general information about the plug-ins and specific information for expressions experiments.
    2626
    27 [source:/plugins/base2/net.sf.basedb.illumina/tags/1.2/README_SNP README_SNP] contains specific information for SNP experiments.
     27[source:/plugins/base2/net.sf.basedb.illumina/tags/1.3/README_SNP README_SNP] contains specific information for SNP experiments.
    2828
    29 [source:/plugins/base2/net.sf.basedb.illumina/trunk/contrib/README_beadstudio2ibs.txt README_beadstudio2ibs.txt] contains information on how to convert Illumina !BeadStudio expression projects to a format usable with this package. This read me file and the associated Perl script is not released as a part of a package yet but it is usable with the 1.2 version and the perl script can be downloaded, [http://baseplugins.thep.lu.se/browser/plugins/base2/net.sf.basedb.illumina/trunk/contrib/beadstudio2ibs.pl?format=raw&rev=940 beadstudio2ibs.pl]
     29[source:/plugins/base2/net.sf.basedb.illumina/tags/1.3/contrib/README_beadstudio2ibs.txt README_beadstudio2ibs.txt] contains information on how to convert Illumina !BeadStudio expression projects to a format usable with this package.
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    … …  
    3838
    3939|| Version || Revision || Date           || Binary (tar.gz) || BASE Version ||
     40|| 1.3     || 969      || Feb 25, 2009 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.3.tar.gz?format=raw illumina-plugins-1.3.tar.gz] (102kB) || 2.9.0 or later ||
    4041|| 1.2     || 912      || Dec 10, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.2.tar.gz?format=raw illumina-plugins-1.2.tar.gz] (95kB) || 2.9.0 or later ||
    4142|| 1.1     || 702      || May 23, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.1.tar.gz?format=raw illumina-plugins-1.1.tar.gz] (95kB) || 2.6.0 or later ||
    4243|| 1.0     || 632      || March 13, 2008 || [attachment:wiki:net.sf.basedb.illumina:illumina-plugins-1.0.tar.gz?format=raw illumina-plugins-1.0.tar.gz] (80kB) || 2.6.0 or later ||
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    44 Source code can be downloaded from the subversion repository. Use the following command to get source code for the 1.1 version:
     45Source code can be downloaded from the subversion repository. Use the following command to get source code for the 1.3 version:
    4546
    46  `svn co http://baseplugins.thep.lu.se/svn/plugins/base2/net.sf.basedb.illumina/tags/1.1 illumina-1.1`
     47 `svn co http://baseplugins.thep.lu.se/svn/plugins/base2/net.sf.basedb.illumina/tags/1.3 illumina-1.3`
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