Changes between Version 63 and Version 64 of PluginDownload


Ignore:
Timestamp:
Aug 27, 2008, 2:41:23 PM (9 years ago)
Author:
jari
Comment:

Moved Illumina package to new plug-in category 'Additional array platform support'

Legend:

Unmodified
Added
Removed
Modified
  • PluginDownload

    v63 v64  
    1212Plug-ins created for BASE 2 do not work with BASE 1.x.
    1313
    14  ''Quality Control (QC)''::
    15  ''Transformation''::
    16    [wiki:se.lu.thep.WeNNI WeNNI]: Missing value imputation. '''Not released yet'''
    17  ''Normalization''::
    18    [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier
    19     ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]).  The Plier algorithm in this plug-in is superseded by the [http://madr.lcb.uu.se/wiki/APT APT] plug-in. Works with BASE '''2.0 and later''' [[br]]
    20    [http://madr.lcb.uu.se/wiki/APT APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''[[BR]]
    21    [wiki:net.sf.basedb.normalizers Normalization package]: A package with different kinds of normalization plug-ins. '''Not released yet.'''
     14 ''Additional array platform support''::
     15   [wiki:net.sf.basedb.illumina Illumina plug-ins package]: A package of plug-ins for working with Illumina Sentrix and Illumina SNP arrays. Works with BASE '''2.6 and later'''[[br]]
     16 ''Analysis''::
     17   Catecory empty
    2218 ''Filter''::
    23  ''Analysis''::
     19   Catecory empty
    2420 ''Import/Export''::
    2521   [wiki:uk.ac.ebi.AffyArrayDesignBatchImporter AffyArrayDesignBatchImporter]: Imports batches of affymetrix array design into base 2. Works with BASE '''2.2 and later''' [[BR]]
     
    2824   [wiki:uk.ac.ebi.Tab2MageExporter Tab2MageExporter]: Exports an experiment meta-data in the tab2mage specification from base 2. Works with BASE '''2.2 and later''' [[BR]]
    2925   [wiki:uk.ac.ebi.Tab2MageImporter Tab2MageImporter]: Imports raw data files and an experiment meta-data in the tab2mage specification into base 2. Works with BASE '''2.2 and later'''
    30  ''Other''::
     26 ''Normalization''::
     27   [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier
     28    ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]).  The Plier algorithm in this plug-in is superseded by the [http://madr.lcb.uu.se/wiki/APT APT] plug-in. Works with BASE '''2.0 and later''' [[br]]
     29   [http://madr.lcb.uu.se/wiki/APT APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''[[BR]]
     30   [wiki:net.sf.basedb.normalizers Normalization package]: A package with different kinds of normalization plug-ins. '''Not released yet.'''
     31 ''Quality Control (QC)''::
     32   Catecory empty
     33 ''Transformation''::
     34   [wiki:se.lu.thep.WeNNI WeNNI]: Missing value imputation. '''Not released yet'''
     35 ''Un-categorized''::
    3136   [wiki:se.lu.onk.BAFsegmentation BAFsegmentation]: Segments B allele frequencies from SNP arrays to identify regions of allelic imbalance. '''Not released yet''' [[br]]
    3237   [wiki:nl.unimaas.bigcat.GCRMA GCRMA]:  Works with BASE '''2.0 and later'''[[BR]]
    33    [wiki:net.sf.basedb.illumina Illumina plug-ins package]: A package of plug-ins for working with Illumina Sentrix and Illumina SNP arrays. Works with BASE '''2.6 and later'''[[br]]
    3438
    3539