Changes between Version 63 and Version 64 of PluginDownload

Timestamp:

Aug 27, 2008, 2:41:23 PM (16 years ago)

Author:

Jari Häkkinen

Comment:

Moved Illumina package to new plug-in category 'Additional array platform support'

PluginDownload

@@ -12 +12 @@
 Plug-ins created for BASE 2 do not work with BASE 1.x.
 
- ''Quality Control (QC)''::
- ''Transformation''::
-   [wiki:se.lu.thep.WeNNI WeNNI]: Missing value imputation. '''Not released yet'''
- ''Normalization''::
-   [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier
-    ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]).  The Plier algorithm in this plug-in is superseded by the [http://madr.lcb.uu.se/wiki/APT APT] plug-in. Works with BASE '''2.0 and later''' [[br]]
-   [http://madr.lcb.uu.se/wiki/APT APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''[[BR]]
-   [wiki:net.sf.basedb.normalizers Normalization package]: A package with different kinds of normalization plug-ins. '''Not released yet.'''
+ ''Additional array platform support''::
+   [wiki:net.sf.basedb.illumina Illumina plug-ins package]: A package of plug-ins for working with Illumina Sentrix and Illumina SNP arrays. Works with BASE '''2.6 and later'''[[br]]
+ ''Analysis''::
+   Catecory empty
  ''Filter''::
- ''Analysis''::
+   Catecory empty
  ''Import/Export''::
    [wiki:uk.ac.ebi.AffyArrayDesignBatchImporter AffyArrayDesignBatchImporter]: Imports batches of affymetrix array design into base 2. Works with BASE '''2.2 and later''' [[BR]]
@@ -28 +24 @@
    [wiki:uk.ac.ebi.Tab2MageExporter Tab2MageExporter]: Exports an experiment meta-data in the tab2mage specification from base 2. Works with BASE '''2.2 and later''' [[BR]]
    [wiki:uk.ac.ebi.Tab2MageImporter Tab2MageImporter]: Imports raw data files and an experiment meta-data in the tab2mage specification into base 2. Works with BASE '''2.2 and later'''
- ''Other''::
+ ''Normalization''::
+   [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier
+    ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]).  The Plier algorithm in this plug-in is superseded by the [http://madr.lcb.uu.se/wiki/APT APT] plug-in. Works with BASE '''2.0 and later''' [[br]]
+   [http://madr.lcb.uu.se/wiki/APT APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''[[BR]]
+   [wiki:net.sf.basedb.normalizers Normalization package]: A package with different kinds of normalization plug-ins. '''Not released yet.'''
+ ''Quality Control (QC)''::
+   Catecory empty
+ ''Transformation''::
+   [wiki:se.lu.thep.WeNNI WeNNI]: Missing value imputation. '''Not released yet'''
+ ''Un-categorized''::
    [wiki:se.lu.onk.BAFsegmentation BAFsegmentation]: Segments B allele frequencies from SNP arrays to identify regions of allelic imbalance. '''Not released yet''' [[br]]
    [wiki:nl.unimaas.bigcat.GCRMA GCRMA]:  Works with BASE '''2.0 and later'''[[BR]]
-   [wiki:net.sf.basedb.illumina Illumina plug-ins package]: A package of plug-ins for working with Illumina Sentrix and Illumina SNP arrays. Works with BASE '''2.6 and later'''[[br]]