Changes between Version 100 and Version 101 of PluginDownload


Ignore:
Timestamp:
Feb 12, 2010, 8:01:06 AM (8 years ago)
Author:
jari
Comment:

Restructuring download list continued ...

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  • PluginDownload

    v100 v101  
    1313|| ''Name'' || ''Type'' || ''BASE version'' || ''Maintainer'' || ''Comment'' ||
    1414|| [wiki:uk.ac.ebi.AffyArrayDesignBatchImporter AffyArrayDesignBatchImporter] || Import || 2.2 || None || Imports batches of Affymetrix array design. ||
     15|| [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE] || Normalization || 2.0 || Lund team || Affymetrix normalization with RMAExpress or Plier ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]). ||
    1516|| [wiki:uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter] || Import || 2.0 || None || Import annotation type and controlled vocabularies from a simple flat file. ||
    1617|| [wiki:uk.ac.scri.batchimporter BatchDataImporter] || Import || 2.2 || Micha Bayer || Imports batches of data files into BASE, creating a single !RawbioAssay for each file. ||
    1718|| [wiki:nl.unimaas.bigcat.GCRMA GCRMA] || Normalization || 2.0 || Patrick Ahles || Normalization of Affymetrix data ||
    1819|| [wiki:net.sf.basedb.illumina Illumina plug-ins package] || Add array platform || 2.12 || Lund team || A package of plug-ins for working with Illumina Sentrix and Illumina SNP arrays. ||
     20|| [wiki:net.sf.basedb.normalizers Normalization package] || Normalization || 2.7 || A package with different kinds of normalization plug-ins. ||
    1921|| [wiki:uk.ac.ebi.Tab2MageExporter Tab2MageExporter] || Export || 2.14.1 || None || Exports an experiment meta-data in the tab2mage specification. ||
    2022|| [wiki:uk.ac.ebi.Tab2MageImporter Tab2MageImporter] || Import || 2.2 || None || Imports raw data files and an experiment meta-data in the tab2mage specification. ||
     
    2527
    2628 ''Normalization''::
    27    [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier
    28     ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz?format=raw download latest] [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.thep.affymetrix/base_affymetrix_plugin-0.7.tar.gz.MD5?format=raw MD5]).  The Plier algorithm in this plug-in is superseded by the [http://madr.lcb.uu.se/wiki/APT APT] plug-in. Works with BASE '''2.0 and later''' [[br]]
    29    [http://madr.lcb.uu.se/wiki/APT APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''[[BR]]
    30    [wiki:net.sf.basedb.normalizers Normalization package]: A package with different kinds of normalization plug-ins. Works with '''BASE 2.7 and later'''
    3129 ''Transformation''::
    3230   [wiki:se.lu.thep.WeNNI WeNNI]: Missing value imputation. '''Not released yet'''