Changes between Version 99 and Version 100 of PluginDownload


Ignore:
Timestamp:
Feb 11, 2010, 7:13:40 PM (10 years ago)
Author:
Jari Häkkinen
Comment:

Restructuring download list continued ...

Legend:

Unmodified
Added
Removed
Modified
  • PluginDownload

    v99 v100  
    99== Plug-ins ==
    1010
    11 Plug-ins available for download are listed in the table below. The maintainer of the plug-ins are indicated and plug-ins that have no assigned maintainer is indicated with 'None known'. Unmaintained plug-ins are included in this table until they are reported to be broken.
     11Plug-ins available for download are listed in the table below.
    1212
    1313|| ''Name'' || ''Type'' || ''BASE version'' || ''Maintainer'' || ''Comment'' ||
    14 || [wiki:net.sf.basedb.illumina Illumina plug-ins package] || Additional array platform support || 2.9 and later || Lund team || A package of plug-ins for working with Illumina Sentrix and Illumina SNP arrays. ||
    15 || [wiki:uk.ac.ebi.AffyArrayDesignBatchImporter AffyArrayDesignBatchImporter] || Import || 2.2 and later || None known || Imports batches of affymetrix array design into BASE ||
     14|| [wiki:uk.ac.ebi.AffyArrayDesignBatchImporter AffyArrayDesignBatchImporter] || Import || 2.2 || None || Imports batches of Affymetrix array design. ||
     15|| [wiki:uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter] || Import || 2.0 || None || Import annotation type and controlled vocabularies from a simple flat file. ||
     16|| [wiki:uk.ac.scri.batchimporter BatchDataImporter] || Import || 2.2 || Micha Bayer || Imports batches of data files into BASE, creating a single !RawbioAssay for each file. ||
     17|| [wiki:nl.unimaas.bigcat.GCRMA GCRMA] || Normalization || 2.0 || Patrick Ahles || Normalization of Affymetrix data ||
     18|| [wiki:net.sf.basedb.illumina Illumina plug-ins package] || Add array platform || 2.12 || Lund team || A package of plug-ins for working with Illumina Sentrix and Illumina SNP arrays. ||
     19|| [wiki:uk.ac.ebi.Tab2MageExporter Tab2MageExporter] || Export || 2.14.1 || None || Exports an experiment meta-data in the tab2mage specification. ||
     20|| [wiki:uk.ac.ebi.Tab2MageImporter Tab2MageImporter] || Import || 2.2 || None || Imports raw data files and an experiment meta-data in the tab2mage specification. ||
    1621
     22 - ''Type'' is categorization of plug-ins. Plug-ins of 'Add array platform' type will extend a BASE installation to support further array platforms. A base set of plug-ins are provided such as import of raw data and normalization. [[br]]
     23 - ''BASE version'' refers to the earliest BASE version usable with the current release of the plug-in. [[br]]
     24 - ''Maintainer'' shows the current maintainer of a plug-in. Plug-ins that have no maintainer are indicated with 'None'. Unmaintained plug-ins are included in the table until they are reported to be broken. If you want to volunteer to maintain a plug-in then make yourself known through the [http://base.thep.lu.se/wiki/MailingLists BASE developer mailing list].
    1725
    18  ''Import/Export''::
    19    [wiki:uk.ac.ebi.AnnotationTypeCvImporter AnnotationTypeCvImporter]: Import annotation type annd controlled vocabularies from a simple flat file into base 2. Works with BASE '''2.0 and later'''[[BR]]
    20    [wiki:uk.ac.scri.batchimporter BatchDataImporter]: Imports batches of data files into BASE, creating a single !RawbioAssay for each file. Works with BASE '''2.2 and later''' [[br]]
    21    [wiki:uk.ac.ebi.Tab2MageExporter Tab2MageExporter]: Exports an experiment meta-data in the tab2mage specification from base 2. Works with BASE '''2.14.1 and later''' [[BR]]
    22    [wiki:uk.ac.ebi.Tab2MageImporter Tab2MageImporter]: Imports raw data files and an experiment meta-data in the tab2mage specification into base 2. Works with BASE '''2.2 and later'''
    2326 ''Normalization''::
    2427   [wiki:se.lu.thep.affymetrix Affymetrix plug-in for BASE]: Affymetrix normalization with RMAExpress or Plier
     
    2629   [http://madr.lcb.uu.se/wiki/APT APT]: Affymetrix Power Tools execution plug-in. Currently apt-probeset-summarize and apt-probeset-geneotype from APT is acccessible through this plug-in. Works with BASE '''2.4 and later'''[[BR]]
    2730   [wiki:net.sf.basedb.normalizers Normalization package]: A package with different kinds of normalization plug-ins. Works with '''BASE 2.7 and later'''
    28  ''Quality Control (QC)''::
    29    Category empty
    3031 ''Transformation''::
    3132   [wiki:se.lu.thep.WeNNI WeNNI]: Missing value imputation. '''Not released yet'''
    3233 ''Un-categorized''::
    3334   [wiki:se.lu.onk.BAFsegmentation BAFsegmentation]: Segments B allele frequencies from SNP arrays to identify regions of allelic imbalance. '''Not released yet''' [[br]]
    34    [wiki:nl.unimaas.bigcat.GCRMA GCRMA]:  Works with BASE '''2.0 and later'''[[BR]]
    3535
    3636