Timeline



Mar 20, 2020:

11:17 AM Changeset [5871] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Fixes to …
8:39 AM Changeset [5870] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Added …

Mar 19, 2020:

9:54 AM Changeset [5869] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Fixed …

Mar 18, 2020:

12:47 PM Changeset [5868] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Implemented …
11:44 AM Changeset [5867] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Started to …

Mar 13, 2020:

9:04 AM Ticket #1232 (Add support for external sequencing) created by Nicklas Nordborg
This is related to the support for NovaSeq sequencing (see #1231). …
8:48 AM Changeset [5866] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? The regular …

Mar 12, 2020:

1:51 PM Changeset [5865] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Demuxing …
8:56 AM Changeset [5864] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
8:48 AM Changeset [5863] by olle
Refs #1029. Updates due to version number change to "1.6.0b8". 1. …

Mar 11, 2020:

11:05 AM Changeset [5862] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Fixes some …
8:07 AM Changeset [5861] by Nicklas Nordborg
Merged fixes in Reggie 4.25.1 to the trunk.
8:04 AM Milestone Reggie v4.25.1 completed
Bug fixes and enhancements for Reggie 4.25. Revision Log: …
8:03 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.25.1 (diff)
8:02 AM reggie-4.25.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.25.1
8:00 AM Changeset [5860] by Nicklas Nordborg
Tagging Reggie 4.25.1
7:59 AM Changeset [5859] by Nicklas Nordborg
Preparing to release Reggie 4.25.1

Mar 10, 2020:

8:16 AM Changeset [5858] by olle
Refs #1029. DNA/RNA extraction wizards "Lab tracking protocol for FFPE …
8:12 AM Changeset [5857] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? The …

Mar 9, 2020:

2:17 PM Changeset [5856] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Added …
2:11 PM Changeset [5855] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq? Added …
11:27 AM Ticket #1231 (Add support for sequencing with NovaSeq) created by Nicklas Nordborg
Sequencing with a NovaSeq is similar to the sequencing with NextSeq …

Mar 6, 2020:

3:38 PM Changeset [5854] by olle
Refs #1029. FFPE section order form generation updated have bar code …
1:44 PM Ticket #1230 (NullPointerException in the "Map external data" wizard) closed by Nicklas Nordborg
fixed: In 5853: […]
1:44 PM Changeset [5853] by Nicklas Nordborg
Fixes #1230: NullPointerException? in the "Map external data" wizard …
1:14 PM Ticket #1230 (NullPointerException in the "Map external data" wizard) created by Nicklas Nordborg
Stacktrace […] It seems to be triggered when re-mapping from a …
11:04 AM Changeset [5852] by olle
Refs #1029. DNA/RNA extraction wizards "Lab tracking protocol for FFPE …

Mar 4, 2020:

2:19 PM Ticket #1229 (Import some variants as annotations) created by Nicklas Nordborg
If we find one or more variants in a sample that belongs to a …
8:28 AM Changeset [5851] by Nicklas Nordborg
References #1228: Add file actions for viewing genotype and variant …
8:26 AM Ticket #1228 (Add file actions for viewing genotype and variant information) closed by Nicklas Nordborg
fixed: In 5850: […]
8:26 AM Changeset [5850] by Nicklas Nordborg
Fixes #1228: Add file actions for viewing genotype and variant …

Mar 3, 2020:

1:31 PM Ticket #1227 (Switch to BASE 3.16) closed by Nicklas Nordborg
fixed: In 5849: […]
1:31 PM Changeset [5849] by Nicklas Nordborg
Fixes #1227: Switch to BASE 3.16
9:02 AM Ticket #1228 (Add file actions for viewing genotype and variant information) created by Nicklas Nordborg
BASE 3.16 now has support for "file viewer actions" …
9:00 AM Ticket #1227 (Switch to BASE 3.16) created by Nicklas Nordborg

Mar 2, 2020:

8:45 AM Changeset [5848] by olle
Refs #1029. New wizard for FFPE section (specimen) tumour cell …

Feb 27, 2020:

9:34 AM Ticket #1226 (More thread deadlocks) closed by Nicklas Nordborg
fixed: In 5847: […]
9:34 AM Changeset [5847] by Nicklas Nordborg
Fixes #1226: More thread deadlocks I hope this can fix the deadlock.
9:26 AM Ticket #1226 (More thread deadlocks) created by Nicklas Nordborg
I got another thread deadlock similar to #1203. It is still in the …

Feb 26, 2020:

2:44 PM Changeset [5846] by Nicklas Nordborg
References #1218: Implement MIPs alignment Fixed some comments.
2:27 PM Changeset [5845] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added manual confirmation …
8:37 AM Changeset [5844] by Nicklas Nordborg
References #1218: Implement MIPs alignment Adding JSP and javascript …

Feb 25, 2020:

2:21 PM Changeset [5843] by Nicklas Nordborg
References #1218: Implement MIPs alignment Importing some numbers …
11:47 AM Changeset [5842] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
11:47 AM Changeset [5841] by Nicklas Nordborg
References #1218: Implement MIPs alignment Finalizing the MIPs …
9:35 AM Changeset [5840] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
9:34 AM Changeset [5839] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the …

Feb 24, 2020:

3:45 PM Changeset [5838] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for the …
3:40 PM Changeset [5837] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the alignment …
1:38 PM Changeset [5836] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
1:37 PM Changeset [5835] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the two steps …
11:11 AM Changeset [5834] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to implement a …
11:05 AM Changeset [5833] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to re-design the …

Feb 21, 2020:

4:19 PM Changeset [5832] by olle
Refs #1029. FFPE section (specimen) registration wizard updated by …
2:36 PM Changeset [5831] by Nicklas Nordborg
References #1218: Implement MIPs alignment Final steps in the …
11:35 AM Changeset [5830] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added alignement with …
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