Timeline



Mar 9, 2020:

2:17 PM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5856: […]
2:17 PM Changeset [5856] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Added …
2:11 PM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
In 5855: […]
2:11 PM Changeset [5855] by Nicklas Nordborg
References #1231: Add support for sequencing with NovaSeq Added …
2:03 PM Ticket #1231 (Add support for sequencing with NovaSeq) updated by Nicklas Nordborg
Summary changed
11:27 AM Ticket #1231 (Add support for sequencing with NovaSeq) created by Nicklas Nordborg
Sequencing with a NovaSeq is similar to the sequencing with NextSeq …

Mar 6, 2020:

3:38 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5854: […]
3:38 PM Changeset [5854] by olle
Refs #1029. FFPE section order form generation updated have bar code …
2:57 PM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
Description changed
2:55 PM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
Description changed
1:44 PM Ticket #1230 (NullPointerException in the "Map external data" wizard) closed by Nicklas Nordborg
fixed: In 5853: […]
1:44 PM Changeset [5853] by Nicklas Nordborg
Fixes #1230: NullPointerException in the "Map external data" wizard …
1:14 PM Ticket #1230 (NullPointerException in the "Map external data" wizard) created by Nicklas Nordborg
Stacktrace […] It seems to be triggered when re-mapping from a …
11:04 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5852: […]
11:04 AM Changeset [5852] by olle
Refs #1029. DNA/RNA extraction wizards "Lab tracking protocol for FFPE …

Mar 4, 2020:

2:21 PM Ticket #1229 (Import some variants as annotations) updated by Nicklas Nordborg
Description changed
2:19 PM Ticket #1229 (Import some variants as annotations) created by Nicklas Nordborg
If we find one or more variants in a sample that belongs to a …
8:28 AM Ticket #1228 (Add file actions for viewing genotype and variant information) updated by Nicklas Nordborg
In 5851: […]
8:28 AM Changeset [5851] by Nicklas Nordborg
References #1228: Add file actions for viewing genotype and variant …
8:26 AM Ticket #1228 (Add file actions for viewing genotype and variant information) closed by Nicklas Nordborg
fixed: In 5850: […]
8:26 AM Changeset [5850] by Nicklas Nordborg
Fixes #1228: Add file actions for viewing genotype and variant …

Mar 3, 2020:

1:31 PM Ticket #1227 (Switch to BASE 3.16) closed by Nicklas Nordborg
fixed: In 5849: […]
1:31 PM Changeset [5849] by Nicklas Nordborg
Fixes #1227: Switch to BASE 3.16
9:02 AM Ticket #1228 (Add file actions for viewing genotype and variant information) created by Nicklas Nordborg
BASE 3.16 now has support for "file viewer actions" …
9:00 AM Ticket #1227 (Switch to BASE 3.16) created by Nicklas Nordborg

Mar 2, 2020:

8:45 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5848: […]
8:45 AM Changeset [5848] by olle
Refs #1029. New wizard for FFPE section (specimen) tumour cell …

Feb 27, 2020:

9:34 AM Ticket #1226 (More thread deadlocks) closed by Nicklas Nordborg
fixed: In 5847: […]
9:34 AM Changeset [5847] by Nicklas Nordborg
Fixes #1226: More thread deadlocks I hope this can fix the deadlock.
9:26 AM Ticket #1226 (More thread deadlocks) created by Nicklas Nordborg
I got another thread deadlock similar to #1203. It is still in the …

Feb 26, 2020:

2:44 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5846: […]
2:44 PM Changeset [5846] by Nicklas Nordborg
References #1218: Implement MIPs alignment Fixed some comments.
2:27 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5845: […]
2:27 PM Changeset [5845] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added manual confirmation …
8:37 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5844: […]
8:37 AM Changeset [5844] by Nicklas Nordborg
References #1218: Implement MIPs alignment Adding JSP and javascript …

Feb 25, 2020:

2:21 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5843: […]
2:21 PM Changeset [5843] by Nicklas Nordborg
References #1218: Implement MIPs alignment Importing some numbers …
11:47 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5842: […]
11:47 AM Changeset [5842] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
11:47 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5841: […]
11:47 AM Changeset [5841] by Nicklas Nordborg
References #1218: Implement MIPs alignment Finalizing the MIPs …
9:35 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5840: […]
9:35 AM Changeset [5840] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
9:34 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5839: […]
9:34 AM Changeset [5839] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the …

Feb 24, 2020:

3:45 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5838: […]
3:45 PM Changeset [5838] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for the …
3:40 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5837: […]
3:40 PM Changeset [5837] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the alignment …
1:38 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5836: […]
1:38 PM Changeset [5836] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
1:37 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5835: […]
1:37 PM Changeset [5835] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the two steps …
11:11 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5834: […]
11:11 AM Changeset [5834] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to implement a …
11:05 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5833: […]
11:05 AM Changeset [5833] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to re-design the …

Feb 21, 2020:

4:19 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5832: […]
4:19 PM Changeset [5832] by olle
Refs #1029. FFPE section (specimen) registration wizard updated by …
2:36 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5831: […]
2:36 PM Changeset [5831] by Nicklas Nordborg
References #1218: Implement MIPs alignment Final steps in the …
11:35 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5830: […]
11:35 AM Changeset [5830] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added alignement with …

Feb 19, 2020:

3:21 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5829: […]
3:21 PM Changeset [5829] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added …
2:02 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5828: […]
2:02 PM Changeset [5828] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added FastqToSam step that …
9:25 AM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5827: […]
9:25 AM Changeset [5827] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added Trimmomatic steps to …

Feb 18, 2020:

2:15 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
In 5826: […]
2:15 PM Changeset [5826] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to implement this …
2:13 PM Ticket #1218 (Implement MIPs alignment) updated by Nicklas Nordborg
Status, Milestone changed
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