Timeline



Mar 4, 2020:

2:19 PM Ticket #1229 (Import some variants as annotations) created by Nicklas Nordborg
If we find one or more variants in a sample that belongs to a …
8:28 AM Changeset [5851] by Nicklas Nordborg
References #1228: Add file actions for viewing genotype and variant …
8:26 AM Ticket #1228 (Add file actions for viewing genotype and variant information) closed by Nicklas Nordborg
fixed: In 5850: […]
8:26 AM Changeset [5850] by Nicklas Nordborg
Fixes #1228: Add file actions for viewing genotype and variant …

Mar 3, 2020:

1:31 PM Ticket #1227 (Switch to BASE 3.16) closed by Nicklas Nordborg
fixed: In 5849: […]
1:31 PM Changeset [5849] by Nicklas Nordborg
Fixes #1227: Switch to BASE 3.16
9:02 AM Ticket #1228 (Add file actions for viewing genotype and variant information) created by Nicklas Nordborg
BASE 3.16 now has support for "file viewer actions" …
9:00 AM Ticket #1227 (Switch to BASE 3.16) created by Nicklas Nordborg

Mar 2, 2020:

8:45 AM Changeset [5848] by olle
Refs #1029. New wizard for FFPE section (specimen) tumour cell …

Feb 27, 2020:

9:34 AM Ticket #1226 (More thread deadlocks) closed by Nicklas Nordborg
fixed: In 5847: […]
9:34 AM Changeset [5847] by Nicklas Nordborg
Fixes #1226: More thread deadlocks I hope this can fix the deadlock.
9:26 AM Ticket #1226 (More thread deadlocks) created by Nicklas Nordborg
I got another thread deadlock similar to #1203. It is still in the …

Feb 26, 2020:

2:44 PM Changeset [5846] by Nicklas Nordborg
References #1218: Implement MIPs alignment Fixed some comments.
2:27 PM Changeset [5845] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added manual confirmation …
8:37 AM Changeset [5844] by Nicklas Nordborg
References #1218: Implement MIPs alignment Adding JSP and javascript …

Feb 25, 2020:

2:21 PM Changeset [5843] by Nicklas Nordborg
References #1218: Implement MIPs alignment Importing some numbers …
11:47 AM Changeset [5842] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
11:47 AM Changeset [5841] by Nicklas Nordborg
References #1218: Implement MIPs alignment Finalizing the MIPs …
9:35 AM Changeset [5840] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
9:34 AM Changeset [5839] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the …

Feb 24, 2020:

3:45 PM Changeset [5838] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for the …
3:40 PM Changeset [5837] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the alignment …
1:38 PM Changeset [5836] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added functions for …
1:37 PM Changeset [5835] by Nicklas Nordborg
References #1218: Implement MIPs alignment Re-designed the two steps …
11:11 AM Changeset [5834] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to implement a …
11:05 AM Changeset [5833] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to re-design the …

Feb 21, 2020:

4:19 PM Changeset [5832] by olle
Refs #1029. FFPE section (specimen) registration wizard updated by …
2:36 PM Changeset [5831] by Nicklas Nordborg
References #1218: Implement MIPs alignment Final steps in the …
11:35 AM Changeset [5830] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added alignement with …

Feb 19, 2020:

3:21 PM Changeset [5829] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added …
2:02 PM Changeset [5828] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added FastqToSam? step that …
9:25 AM Changeset [5827] by Nicklas Nordborg
References #1218: Implement MIPs alignment Added Trimmomatic steps to …

Feb 18, 2020:

2:15 PM Changeset [5826] by Nicklas Nordborg
References #1218: Implement MIPs alignment Started to implement this …

Feb 6, 2020:

11:05 AM Changeset [5825] by Jari Häkkinen
Change needed to find R's BLAS/LAPACK implementation

Feb 4, 2020:

4:43 PM Changeset [5824] by olle
Refs #1029. FFPE section (specimen) registration wizard updated in …
1:31 PM Changeset [5823] by olle
Refs #1029. DNA/RNA Quantification wizard updated in an attempt to …
1:07 PM Changeset [5822] by Nicklas Nordborg
Preparing for future release Reggie 4.26
1:05 PM Changeset [5821] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.25
1:04 PM Milestone Reggie v4.25 completed
See Reggie extension page for more information.
1:03 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.25 (diff)
1:03 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.25 (diff)
1:01 PM reggie-4.25.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.25
12:58 PM Changeset [5820] by Nicklas Nordborg
Tagging Reggie 4.25
12:57 PM Changeset [5819] by Nicklas Nordborg
Preparing to release Reggie 4.25
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