Timeline
Dec 13, 2019:
- 2:26 PM Ticket #1217 (DoNotUse flags and comments should be copied to new child items) updated by
- In 5790: […]
- 2:26 PM Changeset [5790] by
- References #1217: DoNotUse flags and comments should be copied to new …
- 1:58 PM Ticket #1217 (DoNotUse flags and comments should be copied to new child items) updated by
- In 5789: […]
- 1:58 PM Changeset [5789] by
- References #1217: DoNotUse flags and comments should be copied to new …
- 11:49 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) closed by
- fixed: In 5788: […]
- 11:49 AM Changeset [5788] by
- Fixes #1216: Finalize the "Confirm MIPs demux" wizard The wizard now …
- 11:02 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) updated by
- In 5787: […]
- 11:02 AM Changeset [5787] by
- References #1216: Finalize the "Confirm MIPs demux" wizard Added the …
- 9:37 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) updated by
-
Description changed
- 9:36 AM Ticket #1218 (Implement MIPs alignment) created by
- The next step after demux in the MIPs pipeline is an alignment step. A …
- 9:33 AM Ticket #1217 (DoNotUse flags and comments should be copied to new child items) created by
- In wizards with manual selection it is possible to select items with a …
- 9:26 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) created by
- This wizard is full with TODO that are mostly related to not knowing …
- 9:23 AM Ticket #1214 (Add support for external specimen) closed by
- fixed
- 9:22 AM Ticket #1214 (Add support for external specimen) updated by
- In 5786: […]
- 9:22 AM Changeset [5786] by
- References #1214: Add support for external specimen Fixes an issue …
Dec 12, 2019:
- 2:26 PM Ticket #1214 (Add support for external specimen) updated by
- In 5785: […]
- 2:26 PM Changeset [5785] by
- References #1214: Add support for external specimen When an external …
- 8:30 AM Ticket #1214 (Add support for external specimen) updated by
- In 5784: […]
- 8:30 AM Changeset [5784] by
- References #1214: Add support for external specimen Histology images …
- 8:08 AM Ticket #1214 (Add support for external specimen) updated by
- In 5783: […]
- 8:08 AM Changeset [5783] by
- References #1214: Add support for external specimen Display "External …
- 8:07 AM Ticket #1214 (Add support for external specimen) updated by
-
Status changed
Dec 11, 2019:
- 4:00 PM Ticket #1214 (Add support for external specimen) updated by
- In 5782: […]
- 4:00 PM Changeset [5782] by
- References #1214: Add support for external specimen Changes to …
- 1:08 PM Ticket #1215 (Include mutation signature analysis in the variant calling pipeline) created by
- A mutation signature can be calculated from the filtered variants VCF. …
- 12:53 PM Ticket #1214 (Add support for external specimen) created by
- This would be similar to the current support for external RNA items …
- 12:34 PM Ticket #1209 (Add support for storing TMA specimen) updated by
- In 5781: […]
- 12:34 PM Changeset [5781] by
- References #1209: Add support for storing TMA specimen Added support …
Dec 10, 2019:
- 2:29 PM Ticket #1213 (Firefox fails to open some Print dialogs) closed by
- fixed: In 5780: […]
- 2:29 PM Changeset [5780] by
- Fixes #1213: Firefox fails to open some Print dialogs The dialogs are …
- 2:27 PM Ticket #1213 (Firefox fails to open some Print dialogs) updated by
- The nice thing with having …
- 2:24 PM Ticket #1213 (Firefox fails to open some Print dialogs) updated by
- I found the 'dom.disable_window_open_feature.location' setting in …
- 2:10 PM Ticket #1213 (Firefox fails to open some Print dialogs) created by
- There are several places in Reggie were a "Print" button should open a …
- 9:03 AM Ticket #1209 (Add support for storing TMA specimen) updated by
- In 5779: […]
- 9:03 AM Changeset [5779] by
- References #1209: Add support for storing TMA specimen Added a …
- 9:01 AM Ticket #1209 (Add support for storing TMA specimen) updated by
-
Status changed
Dec 9, 2019:
- 9:53 AM Ticket #1212 (Enable filtering step for variant calling in auto-confirm mode) created by
- Auto-confirmation will currently start variant calling in raw-only …
- 9:40 AM Ticket #1211 (Release exporter changes due to TMA specimen importer) created by
- When the TMA importer (#1209) is implemented we should also consider …
- 9:37 AM Ticket #1209 (Add support for storing TMA specimen) updated by
- In 5778: […]
- 9:37 AM Changeset [5778] by
- References #1209: Add support for storing TMA specimen Implemented …
Dec 6, 2019:
- 9:50 AM Ticket #1209 (Add support for storing TMA specimen) updated by
- In 5777: […]
- 9:50 AM Changeset [5777] by
- References #1209: Add support for storing TMA specimen First version …
- 8:08 AM Ticket #1210 (Variant calling fails if no variants are found) closed by
- fixed
- 8:07 AM Ticket #1210 (Variant calling fails if no variants are found) updated by
- In 5776: […]
- 8:07 AM Changeset [5776] by
- References #1210: Variant calling fails if no variants are found …
- 7:56 AM Ticket #1210 (Variant calling fails if no variants are found) updated by
- In 5775: […]
- 7:56 AM Changeset [5775] by
- References #1210: Variant calling fails if no variants are found …
Dec 5, 2019:
- 2:15 PM Ticket #1210 (Variant calling fails if no variants are found) created by
- The first vcfanno step fails with an error message: […] If there …
Dec 4, 2019:
- 12:59 PM Ticket #1209 (Add support for storing TMA specimen) updated by
- In 5774: […]
- 12:59 PM Changeset [5774] by
- References #1209: Add support for storing TMA specimen Added new …
Dec 3, 2019:
- 1:40 PM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5773: […]
- 1:40 PM Changeset [5773] by
- References #1208: Implement wizard for building database of variant …
- 11:56 AM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5772: […]
- 11:56 AM Changeset [5772] by
- References #1208: Implement wizard for building database of variant …
- 11:54 AM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5771: […]
- 11:54 AM Changeset [5771] by
- References #1208: Implement wizard for building database of variant …
- 9:40 AM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5770: […]
- 9:40 AM Changeset [5770] by
- References #1208: Implement wizard for building database of variant …
- 9:38 AM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5769: […]
- 9:38 AM Changeset [5769] by
- References #1208: Implement wizard for building database of variant …
Dec 2, 2019:
- 2:22 PM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5768: […]
- 2:22 PM Changeset [5768] by
- References #1208: Implement wizard for building database of variant …
- 2:20 PM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5767: […]
- 2:20 PM Changeset [5767] by
- References #1208: Implement wizard for building database of variant …
- 10:52 AM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5766: […]
- 10:52 AM Changeset [5766] by
- References #1208: Implement wizard for building database of variant …
Nov 29, 2019:
- 2:30 PM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5765: […]
- 2:30 PM Changeset [5765] by
- References #1208: Implement wizard for building database of variant …
- 1:49 PM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5764: […]
- 1:49 PM Changeset [5764] by
- References #1208: Implement wizard for building database of variant …
- 1:11 PM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
- In 5763: […]
- 1:11 PM Changeset [5763] by
- References #1208: Implement wizard for building database of variant …
- 1:03 PM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) updated by
-
Status changed
- 8:33 AM Ticket #1209 (Add support for storing TMA specimen) created by
- TMA are sometimes created by external projects. We want to track some …
- 7:40 AM Ticket #1208 (Implement wizard for building database of variant frequencies in ...) created by
- The annotation/filtering step in the variant calling pipeline is using …
Nov 28, 2019:
- 1:52 PM Ticket #1207 (Replace the "Nothing yet" in the activity log with a quote-of-the-day) closed by
- fixed: In 5762: […]
- 1:52 PM Changeset [5762] by
- Fixes #1207: Replace the "Nothing yet" in the activity log with a …
- 9:06 AM Ticket #1207 (Replace the "Nothing yet" in the activity log with a quote-of-the-day) updated by
- In 5761: […]
- 9:06 AM Changeset [5761] by
- References #1207: Replace the "Nothing yet" in the activity log with a …
- 8:53 AM Ticket #1207 (Replace the "Nothing yet" in the activity log with a quote-of-the-day) created by
- The "Nothing yet" message in the activity log is a bit boring. We can …
Nov 26, 2019:
- 1:10 PM Changeset [5760] by
- Merged Reggie 4.24.1 to the trunk.
- 1:06 PM Milestone Reggie v4.24.1 completed
- Bug fixes and enhancements for Reggie 4.24. Revision Log: …
- 1:05 PM PluginDownload edited by
- Released Reggie 4.24.1 (diff)
- 1:05 PM net.sf.basedb.reggie edited by
- Released Reggie 4.24.1 (diff)
- 1:03 PM Ticket #1206 (The MIPs aliquot importer should handle some values as special cases) closed by
- fixed: Closing this for now since we need to release the other bugfixes. If …
- 1:02 PM Tickets #1196,1198,1197 batch updated by
-
Milestone changed
The Reggie 4.23.3 milestone was never released separately. Changes was … - 12:59 PM Changeset [5759] by
- Tagging Reggie 4.24.1
- 12:57 PM Changeset [5758] by
- Preparing to release Reggie 4.24.1
- 9:25 AM Ticket #1206 (The MIPs aliquot importer should handle some values as special cases) updated by
- In 5757: […]
- 9:25 AM Changeset [5757] by
- References #1206: The MIPs aliquot importer should handle some values …
- 9:03 AM Ticket #1206 (The MIPs aliquot importer should handle some values as special cases) updated by
-
Summary changed
- 9:02 AM Ticket #1206 (The MIPs aliquot importer should handle some values as special cases) created by
- Some of the columns in the file used for importing MIPs aliquots …
- 8:53 AM Ticket #1202 (Add check for duplicate barcode template in the MIPs library registration) closed by
- fixed
- 7:56 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5756: […]
- 7:56 AM Changeset [5756] by
- Refs #1029. Registration of blood and FFPE blocks updated to set …
Nov 25, 2019:
- 9:40 AM Ticket #1202 (Add check for duplicate barcode template in the MIPs library registration) updated by
- In 5755: […]
- 9:40 AM Changeset [5755] by
- References #1202: Add check for duplicate barcode template in the MIPs …
Nov 22, 2019:
- 2:04 PM Ticket #1202 (Add check for duplicate barcode template in the MIPs library registration) updated by
- In 5754: […]
- 2:04 PM Changeset [5754] by
- References #1202: Add check for duplicate barcode template in the MIPs …
- 1:46 PM Ticket #1205 (Variant calling fails with "malformed BED entry") closed by
- fixed
- 1:10 PM Ticket #1205 (Variant calling fails with "malformed BED entry") updated by
- In 5753: […]
- 1:10 PM Changeset [5753] by
- References #1205: Variant calling fails with "malformed BED entry" …
- 1:02 PM Ticket #1205 (Variant calling fails with "malformed BED entry") updated by
- In 5752: […]
- 1:02 PM Changeset [5752] by
- References #1205: Variant calling fails with "malformed BED entry" …
- 12:52 PM Ticket #1205 (Variant calling fails with "malformed BED entry") created by
- The full error message: […] This seems to happen when a variant is …
- 11:09 AM Ticket #1204 (Change default flow cell type in MIPs create flow cells wizard) closed by
- fixed: In 5751: […]
- 11:09 AM Changeset [5751] by
- Fixes #1204: Change default flow cell type in MIPs create flow cells wizard
- 11:07 AM Ticket #1201 (Incorrect date is displayed for variant calling in the case summary) closed by
- fixed: In 5750: […]
- 11:07 AM Changeset [5750] by
- Fixes #1201: Incorrect date is displayed for variant calling in the …
- 11:02 AM Ticket #1203 (Resolve thread deadlocks) closed by
- fixed: In 5749: […]
- 11:02 AM Changeset [5749] by
- Fixes #1203: Resolve thread deadlocks This should hopefully fix the …
- 9:56 AM Ticket #1204 (Change default flow cell type in MIPs create flow cells wizard) created by
- The NextSeq is the only sequencer that is used.
- 9:44 AM Ticket #1203 (Resolve thread deadlocks) created by
- I have had some issues with thread deadlocks during re-installation of …
Nov 21, 2019:
- 1:19 PM Ticket #1202 (Add check for duplicate barcode template in the MIPs library registration) created by
- In the MIPs library registration wizard it is important that the …
- 1:13 PM Ticket #1201 (Incorrect date is displayed for variant calling in the case summary) created by
- It seems like the date that is displayed is the same as the date for …
- 1:09 PM Changeset [5748] by
- Creating bugfix branch for Reggie 4.24
- 8:40 AM Changeset [5747] by
- Fixes an issue with missing "N" values in the lookup tables for GC …
Nov 20, 2019:
- 3:03 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5746: […]
- 3:03 PM Changeset [5746] by
-
Refs #1029. Updates due to version number change to "
1.6.0-dev". … - 2:27 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5745: […]
- 2:27 PM Changeset [5745] by
-
Refs #1029. Updates due to version number change to "
1.6.0b7". 1. … - 1:46 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5744: […]
- 1:46 PM Changeset [5744] by
- Refs #1029. Updates of BASE method calls due to update of BASE version …
- 8:43 AM Changeset [5743] by
- Preparing for future release Reggie 4.25
- 8:41 AM Milestone Reggie v4.24 completed
- See Reggie extension page for more information.
- 8:41 AM PluginDownload edited by
- Released Reggie 4.24 (diff)
- 8:40 AM net.sf.basedb.reggie edited by
- Released Reggie 4.24 (diff)
- 8:37 AM Changeset [5742] by
- Tagging Reggie 4.24
- 8:36 AM Changeset [5741] by
- Preparing to release Reggie 4.24
- 8:30 AM Changeset [5740] by
- Merged Reggie 4.23.3 to the trunk.
- 8:25 AM Milestone Reggie v4.23.3 completed
- Bug fixes and enhancements for Reggie 4.23.2. Revision Log: …
- 8:24 AM Changeset [5739] by
- Tagging Reggie 4.23.3
- 8:24 AM Changeset [5738] by
- Preparing to release Reggie 4.23.3
- 7:54 AM Ticket #1198 (Add support for PAD to the "Map external data" wizard) closed by
- fixed
- 7:54 AM Ticket #1187 (Implement an "External RNA import" wizard) closed by
- fixed
- 7:54 AM Ticket #1199 (Implement Variant calling pipeline) closed by
- fixed
- 7:40 AM Tickets #1190,1186 batch updated by
-
Milestone changed
- 7:39 AM Tickets #1190,1186 batch updated by
- In 5737: […]
- 7:39 AM Changeset [5737] by
- References #1186 and #1190. Disabling code related to the SSP plug-in …
Nov 19, 2019:
- 3:43 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5736: […]
- 3:43 PM Changeset [5736] by
- References #1199: Implement Variant calling pipeline Fixed some …
- 3:42 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5735: […]
- 3:42 PM Changeset [5735] by
- References #1199: Implement Variant calling pipeline Removed version …
- 1:41 PM Ticket #1199 (Implement Variant calling pipeline) updated by
-
Status changed
- 12:00 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5734: […]
- 11:59 AM Changeset [5734] by
- Refs #1029. Referral form generation wizard for the NordicTrip …
- 11:50 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5733: […]
- 11:50 AM Changeset [5733] by
- Refs #1029. Referral form generation updated to allow projects to use …
- 11:23 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5732: […]
- 11:23 AM Changeset [5732] by
- Refs #1029. Referral form generation updated in generation of referral …
- 10:59 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- * 2019-11-18 the following changes were decided for referral form …
- 10:04 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5731: […]
- 10:04 AM Changeset [5731] by
- References #1199: Implement Variant calling pipeline Added a variant …
Nov 18, 2019:
- 2:12 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5730: […]
- 2:12 PM Changeset [5730] by
- References #1199: Implement Variant calling pipeline Added a dialog …
- 1:43 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5729: […]
- 1:43 PM Changeset [5729] by
- References #1199: Implement Variant calling pipeline Added support …
Nov 15, 2019:
- 11:32 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5728: […]
- 11:32 AM Changeset [5728] by
- References #1199: Implement Variant calling pipeline Implemented …
- 8:24 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- Design update for the NordicTrip referral form generation: * …
Nov 14, 2019:
- 4:14 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5727: […]
- 4:14 PM Changeset [5727] by
-
Refs #1029. Referral form generation updated to add suffix "
.b1" and … - 4:03 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5726: […]
- 4:03 PM Changeset [5726] by
- Refs #1029. Referral form generation for project NordicTrip updated …
Nov 13, 2019:
- 1:32 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5725: […]
- 1:32 PM Changeset [5725] by
- References #1199: Implement Variant calling pipeline Added …
- 11:09 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5724: […]
- 11:09 AM Changeset [5724] by
- References #1199: Implement Variant calling pipeline …
- 9:07 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5723: […]
- 9:07 AM Changeset [5723] by
- References #1199: Implement Variant calling pipeline …
- 8:56 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5722: […]
- 8:56 AM Changeset [5722] by
- References #1199: Implement Variant calling pipeline Updated the …
- 8:53 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5721: […]
- 8:53 AM Changeset [5721] by
- References #1199: Implement Variant calling pipeline Renamed the raw …
- 8:17 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5720: […]
- 8:17 AM Changeset [5720] by
- References #1199: Implement Variant calling pipeline Checked the …
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