Timeline
Sep 20, 2019:
- 1:53 PM Tickets #1178,1179,1181,1183,1184,1185,1177,1180,1182 batch updated by
-
Milestone changed
- 1:40 PM Ticket #1185 (Add link to the demultiplex metrics file in the "Confirm demux" wizards) closed by
- fixed: In 5620: […]
- 1:40 PM Changeset [5620] by
- Fixes #1185: Add link to the demultiplex metrics file in the "Confirm …
- 11:56 AM Ticket #1185 (Add link to the demultiplex metrics file in the "Confirm demux" wizards) created by
- It would be nice if this file could easily be accessed instead of …
- 11:30 AM Ticket #1178 (Scripts should not fail if it can't change group on files) updated by
- In 5619: […]
- 11:30 AM Changeset [5619] by
- References #1178: Scripts should not fail if it can't change group on …
- 8:51 AM Ticket #1178 (Scripts should not fail if it can't change group on files) updated by
- In 5618: […]
- 8:51 AM Changeset [5618] by
- References #1178: Scripts should not fail if it can't change group on …
- 8:43 AM Ticket #1184 (Increase the number of entries displayed by the activity log) closed by
- fixed: In 5617: […]
- 8:43 AM Changeset [5617] by
- Fixes #1184: Increase the number of entries displayed by the activity …
Sep 19, 2019:
- 2:50 PM Ticket #1184 (Increase the number of entries displayed by the activity log) created by
- This seems to currently be limited to 25, but there is room for more. …
- 1:13 PM Ticket #1183 (Change to picard 2.20.8 or later) closed by
- fixed: In 5616: […]
- 1:13 PM Changeset [5616] by
- Fixes #1183: Change to picard 2.20.8 or later
- 1:10 PM Ticket #1183 (Change to picard 2.20.8 or later) created by
-
This version includes an improvement in
ExtractIlluminaBarcodesthat … - 9:46 AM Ticket #1182 (Activity log entry for "pilot reports" should be registered by ...) closed by
- fixed: In 5615: […]
- 9:46 AM Changeset [5615] by
- Fixes #1182: Activity log entry for "pilot reports" should be …
- 8:50 AM Ticket #1182 (Activity log entry for "pilot reports" should be registered by ...) created by
- Right now it is logged as if the report was manually created.
- 8:33 AM Ticket #1181 (Incorrect counter for pilot reports in the activity log) closed by
- fixed: In 5614: […]
- 8:33 AM Changeset [5614] by
- Fixes #1181: Incorrect counter for pilot reports in the activity log …
- 8:21 AM Ticket #1181 (Incorrect counter for pilot reports in the activity log) updated by
- Trying this out by creating pilot reports one by one reveals that the …
- 8:12 AM Ticket #1181 (Incorrect counter for pilot reports in the activity log) created by
-
Created 16777214 pilot reportsThis is clearly not correct. The …
Sep 18, 2019:
- 2:14 PM Ticket #1179 (The "Number of slots" value in the Start demux wizard is always from ...) closed by
- fixed: In 5613: […]
- 2:14 PM Changeset [5613] by
- Fixes #1179: The "Number of slots" value in the Start demux wizard is …
- 2:01 PM Ticket #1179 (The "Number of slots" value in the Start demux wizard is always from ...) updated by
-
Summary changed
- 1:11 PM Ticket #1180 (Activity log entry for "sequencing ended" should be registered by ...) closed by
- fixed: In 5612: […]
- 1:11 PM Changeset [5612] by
- Fixes #1180: Activity log entry for "sequencing ended" should be …
- 1:08 PM Ticket #1180 (Activity log entry for "sequencing ended" should be registered by ...) created by
- Right now it is logged as if the sequencing was manually registered.
- 10:38 AM Ticket #1179 (The "Number of slots" value in the Start demux wizard is always from ...) created by
- reggie-config.xml has a configuration option for the number of slots …
- 10:19 AM Ticket #1177 (Remove <add-read-groups-options> from reggie-config.xml) closed by
- fixed: In 5611: […]
- 10:19 AM Changeset [5611] by
- Fixes #1177: Remove <add-read-groups-options> from reggie-config.xml …
- 9:52 AM Ticket #1178 (Scripts should not fail if it can't change group on files) updated by
-
If we do
chgrp .... || truea failure to change the group will not …
Sep 17, 2019:
- 4:53 PM Changeset [5610] by
- removed obsolete script
- 1:57 PM Ticket #1178 (Scripts should not fail if it can't change group on files) updated by
-
Description changed
- 1:55 PM Ticket #1178 (Scripts should not fail if it can't change group on files) created by
- See #1174. This implemented a 'chgrp' command to allow external data …
Sep 16, 2019:
- 2:53 PM Ticket #1177 (Remove <add-read-groups-options> from reggie-config.xml) created by
- This configuration option is not needed since the …
- 9:10 AM Changeset [5609] by
- Changes for future release Reggie 4.24
- 9:09 AM Milestone Reggie v4.23 completed
- See Reggie extension page for more information.
- 9:09 AM Ticket #1146 (Demux for the MIPs pipeline) closed by
- fixed
- 9:08 AM PluginDownload edited by
- Released Reggie 4.23 (diff)
- 9:07 AM net.sf.basedb.reggie edited by
- Released Reggie 4.23 (diff)
- 9:03 AM Changeset [5608] by
- Tagging Reggie 4.23
- 9:03 AM Changeset [5607] by
- Preparing to release Reggie 4.23
Sep 13, 2019:
- 3:03 PM Ticket #1146 (Demux for the MIPs pipeline) updated by
- In 5606: […]
- 3:03 PM Changeset [5606] by
- References #1146: Demux for the MIPs pipeline Changed default 'smp' …
- 1:11 PM Ticket #1176 (The keep-session-alive functionality should not hide current messages) closed by
- fixed: In 5605: […]
- 1:11 PM Changeset [5605] by
- Fixes #1176: The keep-session-alive functionality should not hide …
- 9:53 AM net.sf.basedb.reggie/notes423 edited by
- Renamed MIPS_Pool to MIPS_Panel (diff)
- 9:51 AM Ticket #1176 (The keep-session-alive functionality should not hide current messages) created by
- I noted a problem with the MIPs plate/aliquot importer. If there are …
- 9:39 AM Ticket #1136 (MIPs plate lab protocol) updated by
- In 5604: […]
- 9:39 AM Changeset [5604] by
- References #1136: MIPs plate lab protocol Changes related to the …
- 9:27 AM Ticket #1135 (Design MIPs plate wizard) updated by
- In 5603: […]
- 9:27 AM Changeset [5603] by
- References #1135: Design MIPs plate wizard Changes related to the …
- 9:12 AM Ticket #1129 (DNA pre-normalization) updated by
- In 5602: […]
- 9:12 AM Changeset [5602] by
- References #1129: DNA pre-normalization Changes related to the …
- 8:58 AM Ticket #1130 (Import wizard for MIPs aliquot plates) updated by
- In 5601: […]
- 8:58 AM Changeset [5601] by
- References #1130: Import wizard for MIPs aliquot plates Changed the …
- 8:52 AM Ticket #1130 (Import wizard for MIPs aliquot plates) updated by
- In 5600: […]
- 8:52 AM Changeset [5600] by
- References #1130: Import wizard for MIPs aliquot plates Changed the …
- 8:49 AM Ticket #1130 (Import wizard for MIPs aliquot plates) updated by
- In 5599: […]
- 8:49 AM Changeset [5599] by
- References #1130: Import wizard for MIPs aliquot plates Changed …
Sep 11, 2019:
- 3:07 PM Changeset [5598] by
- Removing unused import.
- 2:29 PM Ticket #1175 (Temporary R working files may be left in open state) closed by
- fixed: In 5597: […]
- 2:29 PM Changeset [5597] by
- Fixes #1175: Temporary R working files may be left in open state
- 2:28 PM Ticket #1175 (Temporary R working files may be left in open state) updated by
-
Description changed
- 2:26 PM Ticket #1175 (Temporary R working files may be left in open state) updated by
-
Description changed
- 2:26 PM Ticket #1175 (Temporary R working files may be left in open state) created by
-
Assuming that the
closeInparameter is true andoverwriteis … - 2:14 PM net.sf.basedb.reggie/notes423 edited by
- Added information about giving read access to data files for external … (diff)
- 2:07 PM Ticket #1174 (Permission on files created by secondary analysis for external samples) closed by
- fixed
- 1:49 PM Ticket #1174 (Permission on files created by secondary analysis for external samples) updated by
- In 5596: […]
- 1:49 PM Changeset [5596] by
- References #1174: Permission on files created by secondary analysis …
- 1:32 PM Ticket #1174 (Permission on files created by secondary analysis for external samples) updated by
- In 5595: […]
- 1:32 PM Changeset [5595] by
- References #1174: Permission on files created by secondary analysis …
- 12:52 PM Ticket #1174 (Permission on files created by secondary analysis for external samples) updated by
- In 5594: […]
- 12:52 PM Changeset [5594] by
- References #1174: Permission on files created by secondary analysis …
- 11:14 AM Ticket #1174 (Permission on files created by secondary analysis for external samples) updated by
- In 5593: […]
- 11:14 AM Changeset [5593] by
- References #1174: Permission on files created by secondary analysis …
- 9:31 AM Ticket #1174 (Permission on files created by secondary analysis for external samples) created by
- Files that are created as part of secondary analysis are usually …
Sep 10, 2019:
- 1:33 PM Tickets #1159,1157,1172 batch updated by
- fixed
- 11:05 AM net.sf.basedb.reggie/notes423 edited by
- Added more details about barcode template bioplates (diff)
Sep 6, 2019:
- 10:44 AM net.sf.basedb.reggie/notes423 edited by
- Added note about sequence order for the second barcode read (diff)
- 10:39 AM Ticket #1146 (Demux for the MIPs pipeline) updated by
- In 5592: […]
- 10:39 AM Changeset [5592] by
- References #1146: Demux for the MIPs pipeline Implemented support for …
Sep 4, 2019:
- 2:35 PM net.sf.basedb.reggie/notes423 edited by
- Added note about updating BASE and about the DNANormalization protocol (diff)
- 2:22 PM Ticket #1129 (DNA pre-normalization) updated by
- In 5591: […]
- 2:22 PM Changeset [5591] by
- References #1129: DNA pre-normalization The DNA/RNA/Flowthrough …
- 9:26 AM Ticket #1131 (Switch to BASE 3.15) updated by
- In 5590: […]
- 9:26 AM Changeset [5590] by
- References #1131: Switch to BASE 3.15 Switched to BASE 3.15.2 since …
- 9:00 AM net.sf.basedb.reggie edited by
- Added a row for Reggie 4.23 to the download table to make it easier to … (diff)
- 8:58 AM net.sf.basedb.reggie/notes423 edited by
- More update instructions (diff)
- 8:09 AM Ticket #1146 (Demux for the MIPs pipeline) updated by
- In 5589: […]
- 8:09 AM Changeset [5589] by
- References #1146: Demux for the MIPs pipeline Added fqpaste.pl to the …
Aug 30, 2019:
- 1:51 PM Ticket #1146 (Demux for the MIPs pipeline) updated by
- In 5588: […]
- 1:51 PM Changeset [5588] by
- References #1146: Demux for the MIPs pipeline The "read group" file …
- 11:31 AM Ticket #1146 (Demux for the MIPs pipeline) updated by
- In 5587: […]
- 11:31 AM Changeset [5587] by
- References #1146: Demux for the MIPs pipeline Now generates a "read …
Aug 29, 2019:
- 1:52 PM Ticket #1146 (Demux for the MIPs pipeline) updated by
- In 5586: […]
- 1:52 PM Changeset [5586] by
- References #1146: Demux for the MIPs pipeline Changes the MIPs demux …
Aug 26, 2019:
- 2:19 PM Ticket #1146 (Demux for the MIPs pipeline) updated by
- In 5585: […]
- 2:19 PM Changeset [5585] by
- References #1146: Demux for the MIPs pipeline Allow barcode names to …
- 2:16 PM Ticket #1161 (Update picard to 2.20) updated by
- In 5584: […]
- 2:16 PM Changeset [5584] by
- References #1161: Update picard to 2.20 If we set the …
Aug 21, 2019:
- 2:44 PM Ticket #1173 (Link a single <host> entry to more than one OpenGrid cluster) closed by
- fixed: In 5583: […]
- 2:44 PM Changeset [5583] by
- Fixes #1173: Link a single <host> entry to more than one OpenGrid cluster
- 1:44 PM Ticket #1173 (Link a single <host> entry to more than one OpenGrid cluster) created by
-
In
reggie-config.xmla<host>entry is linked to an OpenGrid … - 1:04 PM Tickets #1142,1146 batch updated by
- In 5582: […]
- 1:04 PM Changeset [5582] by
-
References #1146 and #1142. Changed the
MIPsSecondaryAnalysisrole … - 9:07 AM Ticket #1172 (The message in the "Secondary analysis cleanup" wizard is confusing) updated by
- In 5581: […]
- 9:07 AM Changeset [5581] by
- References #1172: The message in the "Secondary analysis cleanup" …
Note:
See TracTimeline
for information about the timeline view.
