Timeline



Jun 10, 2019:

2:49 PM Ticket #1146 (Demux for the MIPs pipeline) updated by Nicklas Nordborg
In 5480: […]
2:49 PM Changeset [5480] by Nicklas Nordborg
References #1146: Demux for the MIPs pipeline Added "Pipeline" …
2:32 PM Ticket #1146 (Demux for the MIPs pipeline) updated by Nicklas Nordborg
In 5479: […]
2:32 PM Changeset [5479] by Nicklas Nordborg
References #1146: Demux for the MIPs pipeline The existing demux …
1:01 PM Ticket #1146 (Demux for the MIPs pipeline) updated by Nicklas Nordborg
Status changed
1:01 PM Ticket #1146 (Demux for the MIPs pipeline) created by Nicklas Nordborg
This is probably similar to the RNAseq demux in some sense, but …
12:59 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5478: […]
12:59 PM Changeset [5478] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start/end/confirm …
10:44 AM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5477: […]
10:44 AM Changeset [5477] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start/end/confirm …
10:41 AM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
Summary changed
9:50 AM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5476: […]
9:50 AM Changeset [5476] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Updated …

Jun 5, 2019:

4:21 PM Ticket #1144 (Line numbers in the INCA report files seems to be data lines and not ...) closed by Nicklas Nordborg
fixed
4:21 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5475: […]
4:21 PM Changeset [5475] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing The …
4:14 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5474: […]
4:14 PM Changeset [5474] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Added a …
2:07 PM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5473: […]
2:07 PM Changeset [5473] by Nicklas Nordborg
References #1138: MIPs pooling Register any-to-any links from pools …
1:26 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5472: […]
1:26 PM Changeset [5472] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Counters …
1:11 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5471: […]
1:11 PM Changeset [5471] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Manual …
10:44 AM Ticket #1145 (Location of data for external RNA) created by Nicklas Nordborg
The code that generates a folder location from an item name doesn't …
8:28 AM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5470: […]
8:28 AM Changeset [5470] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing …

Jun 4, 2019:

3:44 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5469: […]
3:44 PM Changeset [5469] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Added …
2:52 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5468: […]
2:52 PM Changeset [5468] by olle
Refs #1029. Updates of BASE method calls due to update of BASE version …
2:51 PM Ticket #1143 (INCA import fails if the last column is empty in one or more rows) closed by Nicklas Nordborg
fixed: In 5467: […]
2:51 PM Changeset [5467] by Nicklas Nordborg
Fixes #1143: INCA import fails if the last column is empty in one or …
2:48 PM Ticket #1144 (Line numbers in the INCA report files seems to be data lines and not ...) updated by Nicklas Nordborg
Fixed in [5466]. Also fixes a similar problem with column numbers.
2:46 PM Changeset [5466] by Nicklas Nordborg
2:35 PM Ticket #1144 (Line numbers in the INCA report files seems to be data lines and not ...) created by Nicklas Nordborg
They differ with 1 from the actual line number in the file.
2:33 PM Ticket #1143 (INCA import fails if the last column is empty in one or more rows) created by Nicklas Nordborg
In the report for excluded lines there is a message that some rows has …
2:31 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5465: […]
2:31 PM Changeset [5465] by olle
Refs #1029. Updates due to update of BASE version to "3.15.0". 1. …
2:28 PM Ticket #1130 (Import wizard for MIPs aliquot plates) updated by Nicklas Nordborg
In 5464: […]
2:28 PM Changeset [5464] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates The importer …

Jun 3, 2019:

12:56 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5463: […]
12:56 PM Changeset [5463] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Remove …
12:55 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5462: […]
12:55 PM Changeset [5462] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing …
11:05 AM Ticket #1130 (Import wizard for MIPs aliquot plates) updated by Nicklas Nordborg
In 5461: […]
11:05 AM Changeset [5461] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Changed the …
9:22 AM Ticket #1135 (Design MIPs plate wizard) updated by Nicklas Nordborg
In 5460: […]
9:22 AM Changeset [5460] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Added a MIPS pool row to …

May 29, 2019:

4:05 PM Ticket #1135 (Design MIPs plate wizard) updated by Nicklas Nordborg
In 5459: […]
4:05 PM Changeset [5459] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Added a "preview" of the …
1:41 PM Ticket #1135 (Design MIPs plate wizard) updated by Nicklas Nordborg
In 5458: […]
1:41 PM Changeset [5458] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Added a special dialog for …
8:10 AM Ticket #1135 (Design MIPs plate wizard) updated by Nicklas Nordborg
In 5457: […]
8:10 AM Changeset [5457] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Set …
8:00 AM Ticket #1129 (DNA pre-normalization) updated by Nicklas Nordborg
In 5456: […]
8:00 AM Changeset [5456] by Nicklas Nordborg
References #1129: DNA pre-normalization Added a separate counter on …

May 28, 2019:

4:11 PM Ticket #1135 (Design MIPs plate wizard) updated by Nicklas Nordborg
In 5455: […]
4:11 PM Changeset [5455] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Fixed a problem with empty …
3:44 PM Ticket #1135 (Design MIPs plate wizard) updated by Nicklas Nordborg
In 5454: […]
3:44 PM Changeset [5454] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Fixed problems with …
12:47 PM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5453: […]
12:47 PM Changeset [5453] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Added …
7:54 AM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5452: […]
7:54 AM Changeset [5452] by Nicklas Nordborg
References #1138: MIPs pooling Only display pooling protocols of the …

May 27, 2019:

3:09 PM Ticket #1136 (MIPs plate lab protocol) updated by Nicklas Nordborg
In 5451: […]
3:09 PM Changeset [5451] by Nicklas Nordborg
References #1136: MIPs plate lab protocol Updated the lab protocols …
12:50 PM Tickets #1136,​1137 batch updated by Nicklas Nordborg
In 5450: […]
12:50 PM Changeset [5450] by Nicklas Nordborg
References #1136 and #1137. Added some date and operator annotations …
11:32 AM Ticket #1129 (DNA pre-normalization) updated by Nicklas Nordborg
In 5449: […]
11:32 AM Changeset [5449] by Nicklas Nordborg
References #1129: DNA pre-normalization Enabled the MIPS_Pool
11:28 AM Ticket #1135 (Design MIPs plate wizard) updated by Nicklas Nordborg
(for some reason the message was omitted from the commit so I paste it …
9:19 AM Changeset [5448] by Nicklas Nordborg

May 24, 2019:

2:35 PM Ticket #1130 (Import wizard for MIPs aliquot plates) updated by Nicklas Nordborg
In 5447: […]
2:35 PM Changeset [5447] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Added more …
9:02 AM Ticket #1135 (Design MIPs plate wizard) updated by Nicklas Nordborg
In 5446: […]
9:02 AM Changeset [5446] by Nicklas Nordborg
References #1135: Design MIPs plate wizard Implemented functionality …

May 23, 2019:

9:53 AM Ticket #1140 (Switch to Java 11) updated by Nicklas Nordborg
In 5445: […]
9:53 AM Changeset [5445] by Nicklas Nordborg
References #1140: Switch to Java 11 The workdir variable should not …
9:52 AM Ticket #1130 (Import wizard for MIPs aliquot plates) updated by Nicklas Nordborg
In 5444: […]
9:52 AM Changeset [5444] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Implemented …

May 21, 2019:

8:06 AM Ticket #1140 (Switch to Java 11) closed by Nicklas Nordborg
fixed
8:05 AM Ticket #1140 (Switch to Java 11) updated by Nicklas Nordborg
In 5443: […]
8:05 AM Changeset [5443] by Nicklas Nordborg
References #1140: Switch to Java 11 Updated README.
8:00 AM Ticket #1133 (Re-organize the Reggie front page) updated by Nicklas Nordborg
In 5442: […]
8:00 AM Changeset [5442] by Nicklas Nordborg
References #1133: Re-organize the Reggie front page Adjusting column …
7:36 AM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5441: […]
7:36 AM Changeset [5441] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Added …
7:34 AM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
Status changed

May 20, 2019:

2:12 PM Tickets #1135,​1136 batch updated by Nicklas Nordborg
In 5440: […]
2:12 PM Changeset [5440] by Nicklas Nordborg
References #1135 and #1136. Added functionality for displaying the …
8:42 AM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) updated by Nicklas Nordborg
In 5439: […]
8:42 AM Changeset [5439] by Nicklas Nordborg
References #1142: Create MIPs flow cell and start sequencing Added a …
8:40 AM Ticket #1142 (Create MIPs flow cell and start/end/confirm sequencing) created by Nicklas Nordborg
We need at least one wizard for registering that sequencing has …

May 17, 2019:

2:33 PM Ticket #1137 (Register MIPs libraries) updated by Nicklas Nordborg
In 5438: […]
2:33 PM Changeset [5438] by Nicklas Nordborg
References #1137: Register MIPs libraries Added Pipeline annotation …
2:24 PM Ticket #1137 (Register MIPs libraries) updated by Nicklas Nordborg
In 5437: […]
2:24 PM Changeset [5437] by Nicklas Nordborg
References #1137: Register MIPs libraries Added Pipeline annotation …
1:55 PM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5436: […]
1:55 PM Changeset [5436] by Nicklas Nordborg
References #1138: MIPs pooling Updated the "Create manual pool" …
11:40 AM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5435: […]
11:40 AM Changeset [5435] by Nicklas Nordborg
References #1138: MIPs pooling Updated the "Create flow cells" wizard …
10:02 AM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5434: […]
10:02 AM Changeset [5434] by Nicklas Nordborg
References #1138: MIPs pooling Introduced the Pipeline annotation …
8:09 AM Ticket #1119 (Re-implement TIFF to JPG conversion for Histology images using the ...) updated by Nicklas Nordborg
In 5433: […]
8:09 AM Changeset [5433] by Nicklas Nordborg
References #1119: Re-implement TIFF to JPG conversion for Histology …
8:05 AM Ticket #1119 (Re-implement TIFF to JPG conversion for Histology images using the ...) updated by Nicklas Nordborg
In 5432: […]
8:05 AM Changeset [5432] by Nicklas Nordborg
References #1119: Re-implement TIFF to JPG conversion for Histology …

May 16, 2019:

12:56 PM Ticket #1140 (Switch to Java 11) updated by Nicklas Nordborg
In 5431: […]
12:56 PM Changeset [5431] by Nicklas Nordborg
References #1140: Switch to Java 11 Replaced the finalize() methods …
9:11 AM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5430: […]
9:11 AM Changeset [5430] by Nicklas Nordborg
References #1138: MIPs pooling Implemented a check for duplicate …
8:13 AM Ticket #1137 (Register MIPs libraries) updated by Nicklas Nordborg
In 5429: […]
8:13 AM Changeset [5429] by Nicklas Nordborg
References #1137: Register MIPs libraries Added BarcodeTemplate

May 15, 2019:

3:31 PM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5428: […]
3:31 PM Changeset [5428] by Nicklas Nordborg
References #1138: MIPs pooling Adding the wizard also (should have …

May 14, 2019:

2:42 PM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5427: […]
2:42 PM Changeset [5427] by Nicklas Nordborg
References #1138: MIPs pooling First version of the pooling wizard …
11:28 AM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
In 5426: […]
11:28 AM Changeset [5426] by Nicklas Nordborg
References #1138: MIPs pooling Added a counter for MIPs plates …
11:22 AM Ticket #1138 (MIPs pooling) updated by Nicklas Nordborg
Status changed
8:49 AM Ticket #1137 (Register MIPs libraries) updated by Nicklas Nordborg
In 5425: […]
8:49 AM Changeset [5425] by Nicklas Nordborg
References #1137: Register MIPs libraries First version of this …
8:42 AM Ticket #1137 (Register MIPs libraries) updated by Nicklas Nordborg
Status changed

May 13, 2019:

3:10 PM Ticket #1136 (MIPs plate lab protocol) updated by Nicklas Nordborg
In 5424: […]
3:10 PM Changeset [5424] by Nicklas Nordborg
References #1136: MIPs plate lab protocol Started to work on the …
3:07 PM Ticket #1136 (MIPs plate lab protocol) updated by Nicklas Nordborg
Status changed
3:06 PM Ticket #1140 (Switch to Java 11) updated by Nicklas Nordborg
Status changed
12:53 PM Ticket #1141 (Improve error message when an item is registred in duplicate) closed by Nicklas Nordborg
fixed: In 5423: […]
12:53 PM Changeset [5423] by Nicklas Nordborg
Fixes #1141: Improve error message when an item is registred in …
11:55 AM Ticket #1141 (Improve error message when an item is registred in duplicate) created by Nicklas Nordborg
This happens very rarely. The typical use case is that two users is …
11:32 AM Ticket #1134 (Implement an "Activity log") updated by Nicklas Nordborg
In 5422: […]
11:32 AM Changeset [5422] by Nicklas Nordborg
References #1134: Implement an "Activity log" Use the new methods …
11:02 AM Ticket #1134 (Implement an "Activity log") updated by Nicklas Nordborg
In 5421: […]
11:02 AM Changeset [5421] by Nicklas Nordborg
References #1134: Implement an "Activity log" Update the activity log …
9:51 AM Ticket #1130 (Import wizard for MIPs aliquot plates) updated by Nicklas Nordborg
In 5420: […]
9:51 AM Changeset [5420] by Nicklas Nordborg
References #1130: Import wizard for MIPs aliquot plates Updated the …
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