Timeline



Nov 16, 2018:

2:19 PM Changeset [5104] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
12:32 PM Changeset [5103] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
9:20 AM Changeset [5102] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
8:26 AM Changeset [5101] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …

Nov 15, 2018:

2:18 PM Changeset [5100] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
1:13 PM Changeset [5099] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
11:43 AM Changeset [5098] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
9:07 AM Changeset [5097] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …

Nov 14, 2018:

2:52 PM Changeset [5096] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
2:35 PM Changeset [5095] by olle
Refs #1029. Updates needed for FFPE blocks in selection menus to show …
2:19 PM Changeset [5094] by olle
Refs #1029. MeLuDI updated with new configuration variables …
1:26 PM Changeset [5093] by olle
Refs #1029. Basic support for Histology and H&E glass items added. The …
12:05 PM Changeset [5092] by olle
Refs #1029. Support for showing connected "chained" items in Case …
10:46 AM Changeset [5091] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
9:22 AM Changeset [5090] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …
8:15 AM Changeset [5089] by Nicklas Nordborg
References #1075: Change the release exporter to work with list of …

Nov 13, 2018:

3:58 PM net.sf.basedb.reggie/notes421 created by Nicklas Nordborg
Adding update notes for Reggie 4.21
3:39 PM Ticket #1077 (All biosource items should have an external id (release id)) closed by Nicklas Nordborg
fixed: (In [5088]) Fixes #1077: All biosource items should have an external …
3:39 PM Changeset [5088] by Nicklas Nordborg
Fixes #1077: All biosource items should have an external id (release …
2:20 PM Ticket #1077 (All biosource items should have an external id (release id)) created by Nicklas Nordborg
Currently, among the Biosource item types it is only Patient items …
1:25 PM Ticket #1076 (The Level 3 export plug-in should generate rsync script with -L option) closed by Nicklas Nordborg
fixed: (In [5087]) Fixes #1076: The Level 3 export plug-in should generate …
1:25 PM Changeset [5087] by Nicklas Nordborg
Fixes #1076: The Level 3 export plug-in should generate rsync script …
1:12 PM Ticket #1076 (The Level 3 export plug-in should generate rsync script with -L option) created by Nicklas Nordborg
The current script only has -l option (implicit via -a) which …
10:22 AM Ticket #1075 (Change the release exporter to work with list of patients) created by Nicklas Nordborg
The current release exporter plug-in works with a list of raw …
10:17 AM Ticket #1074 (Add more subtypes) created by Nicklas Nordborg
The next release will start from the patient side and include other …

Nov 12, 2018:

11:21 AM Changeset [5086] by Nicklas Nordborg
References #1072: Introduce Lysate item between RNA and Specimen …
8:58 AM Changeset [5085] by Nicklas Nordborg
References #1072: Introduce Lysate item between RNA and Specimen …
8:31 AM Changeset [5084] by olle
Refs #1029. FFPE section order form wizard updated to show material …
7:56 AM Changeset [5083] by olle
Refs #1029. FFPE section order form wizard updated when creating label …
7:49 AM Changeset [5082] by olle
Refs #1029. FFPE section order form generation updated for new PDF …

Nov 9, 2018:

11:11 AM Changeset [5081] by Nicklas Nordborg
References #1072: Introduce Lysate item between RNA and Specimen …
8:52 AM Changeset [5080] by Nicklas Nordborg
References #1072: Introduce Lysate item between RNA and Specimen …

Nov 8, 2018:

1:30 PM Changeset [5079] by Nicklas Nordborg
References #1072: Introduce Lysate item between RNA and Specimen The …
12:59 PM Changeset [5078] by Nicklas Nordborg
References #1072: Introduce Lysate item between RNA and Specimen The …

Nov 7, 2018:

1:12 PM Changeset [5077] by Nicklas Nordborg
References #1072: Introduce Lysate item between RNA and Specimen …
10:39 AM Ticket #1073 (Switch to BASE 3.13) closed by Nicklas Nordborg
fixed: (In [5076]) Fixes #1073: Switch to BASE 3.13
10:39 AM Changeset [5076] by Nicklas Nordborg
Fixes #1073: Switch to BASE 3.13
9:55 AM Ticket #1073 (Switch to BASE 3.13) created by Nicklas Nordborg
Since this is the current version.
9:43 AM Ticket #1072 (Introduce Lysate item between RNA and Specimen) created by Nicklas Nordborg
The existing structure has a direct link between RNA and Specimen. We …

Nov 6, 2018:

4:42 PM Changeset [5075] by olle
Refs #1029. Annotation type Annotationtype.LOCALIZATION updated to …
8:59 AM Changeset [5074] by olle
Refs #1029. FFPE block registration wizard updated for new input …

Nov 5, 2018:

4:29 PM Changeset [5073] by olle
Refs #1029. FFPE block registration wizard updated by fixing typo: …

Nov 1, 2018:

2:34 PM Changeset [5072] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
2:10 PM Changeset [5071] by olle
Refs #1029. Updates due to version number change to "1.6.0a9". 1. …
8:46 AM Changeset [5070] by olle
Refs #1029. FFPE block order form wizard updated by renaming button …
8:37 AM Changeset [5069] by olle
Refs #1029. FFPE section order form wizard updated to create label …

Oct 31, 2018:

9:03 AM Changeset [5068] by olle
Refs #1029. Data access object file SpecimenTube.java in …
8:57 AM Changeset [5067] by Nicklas Nordborg
Changes for future release Reggie 4.21
8:55 AM Milestone Reggie v4.20 completed
See Reggie extension page for more information.
8:55 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.20 (diff)
8:53 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.20 (diff)
8:51 AM reggie-4.20.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.20
8:50 AM Ticket #1054 (Even more functionality in the Flagged alignment wizard) closed by Nicklas Nordborg
fixed
8:47 AM Changeset [5066] by Nicklas Nordborg
Tagging Reggie 4.20
8:47 AM Changeset [5065] by Nicklas Nordborg
Preparing to release Reggie 4.20
8:44 AM Changeset [5064] by Nicklas Nordborg
References #1068: Add mBAF analysis step to the Hisat/StringTie?
8:39 AM Changeset [5063] by Nicklas Nordborg
References #1054: Even more functionality in the Flagged alignment …
8:35 AM Ticket #1068 (Add mBAF analysis step to the Hisat/StringTie pipeline) closed by Nicklas Nordborg
fixed

Oct 30, 2018:

2:58 PM Changeset [5062] by olle
Refs #1029. First version of registration wizard for returned FFPE …
10:49 AM Changeset [5061] by olle
Refs #1029. FFPE section block/section wizards updated for new/changed …

Oct 29, 2018:

4:57 PM Changeset [5060] by olle
Refs #1029. First version of FFPE section (specimen) registration …
11:11 AM Ticket #1067 (Highlight related items in Case summary) closed by Nicklas Nordborg
fixed
11:11 AM Changeset [5059] by Nicklas Nordborg
References #1067: Highlight related items in Case summary Do not …
10:45 AM Ticket #1070 (The consent registration wizard doesn't check existing consent) closed by Nicklas Nordborg
fixed: (In [5058]) Fixes #1070: The consent registration wizard doesn't check …
10:45 AM Changeset [5058] by Nicklas Nordborg
Fixes #1070: The consent registration wizard doesn't check existing consent
8:26 AM Changeset [5057] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 26, 2018:

12:53 PM Changeset [5056] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
9:39 AM Changeset [5055] by Nicklas Nordborg
9:35 AM Changeset [5054] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:19 AM Changeset [5053] by olle
Refs #1029. FFPE section order form updated for "Yellow label" FFPE …

Oct 25, 2018:

3:05 PM Changeset [5052] by olle
Refs #1029. FFPE section order form wizard updated to keep track of …

Oct 24, 2018:

1:24 PM Changeset [5051] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:21 AM Changeset [5050] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 23, 2018:

3:04 PM Changeset [5049] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 22, 2018:

5:00 PM Changeset [5048] by olle
Refs #1029. FFPE section order form wizard updated to show PAD number …
1:09 PM Changeset [5047] by olle
Refs #1029. FFPE block registration wizard updated by fixing bug in …
11:21 AM Changeset [5046] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
9:16 AM Changeset [5045] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 19, 2018:

4:13 PM Changeset [5044] by olle
Refs #1029. First version of FFPE block registration wizard added: …
1:37 PM Ticket #1071 (Installation wizard doesn't show error message) closed by Nicklas Nordborg
fixed
1:35 PM Changeset [5043] by Nicklas Nordborg
References #1071: Installation wizard doesn't show error message The …
1:30 PM Changeset [5042] by Nicklas Nordborg
References #1071: Installation wizard doesn't show error message …
1:23 PM Changeset [5041] by Nicklas Nordborg
References #1071: Installation wizard doesn't show error message The …
1:20 PM Ticket #1071 (Installation wizard doesn't show error message) created by Nicklas Nordborg
If there is an error (that can't be fixed) in the installation wizard …
12:31 PM Changeset [5040] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:31 AM Changeset [5039] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
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