Timeline



Nov 7, 2018:

1:12 PM Changeset [5077] by Nicklas Nordborg
References #1072: Introduce Lysate item between RNA and Specimen …
10:39 AM Ticket #1073 (Switch to BASE 3.13) closed by Nicklas Nordborg
fixed: (In [5076]) Fixes #1073: Switch to BASE 3.13
10:39 AM Changeset [5076] by Nicklas Nordborg
Fixes #1073: Switch to BASE 3.13
9:55 AM Ticket #1073 (Switch to BASE 3.13) created by Nicklas Nordborg
Since this is the current version.
9:43 AM Ticket #1072 (Introduce Lysate item between RNA and Specimen) created by Nicklas Nordborg
The existing structure has a direct link between RNA and Specimen. We …

Nov 6, 2018:

4:42 PM Changeset [5075] by olle
Refs #1029. Annotation type Annotationtype.LOCALIZATION updated to …
8:59 AM Changeset [5074] by olle
Refs #1029. FFPE block registration wizard updated for new input …

Nov 5, 2018:

4:29 PM Changeset [5073] by olle
Refs #1029. FFPE block registration wizard updated by fixing typo: …

Nov 1, 2018:

2:34 PM Changeset [5072] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
2:10 PM Changeset [5071] by olle
Refs #1029. Updates due to version number change to "1.6.0a9". 1. …
8:46 AM Changeset [5070] by olle
Refs #1029. FFPE block order form wizard updated by renaming button …
8:37 AM Changeset [5069] by olle
Refs #1029. FFPE section order form wizard updated to create label …

Oct 31, 2018:

9:03 AM Changeset [5068] by olle
Refs #1029. Data access object file SpecimenTube.java in …
8:57 AM Changeset [5067] by Nicklas Nordborg
Changes for future release Reggie 4.21
8:55 AM Milestone Reggie v4.20 completed
See Reggie extension page for more information.
8:55 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.20 (diff)
8:53 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.20 (diff)
8:51 AM reggie-4.20.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.20
8:50 AM Ticket #1054 (Even more functionality in the Flagged alignment wizard) closed by Nicklas Nordborg
fixed
8:47 AM Changeset [5066] by Nicklas Nordborg
Tagging Reggie 4.20
8:47 AM Changeset [5065] by Nicklas Nordborg
Preparing to release Reggie 4.20
8:44 AM Changeset [5064] by Nicklas Nordborg
References #1068: Add mBAF analysis step to the Hisat/StringTie?
8:39 AM Changeset [5063] by Nicklas Nordborg
References #1054: Even more functionality in the Flagged alignment …
8:35 AM Ticket #1068 (Add mBAF analysis step to the Hisat/StringTie pipeline) closed by Nicklas Nordborg
fixed

Oct 30, 2018:

2:58 PM Changeset [5062] by olle
Refs #1029. First version of registration wizard for returned FFPE …
10:49 AM Changeset [5061] by olle
Refs #1029. FFPE section block/section wizards updated for new/changed …

Oct 29, 2018:

4:57 PM Changeset [5060] by olle
Refs #1029. First version of FFPE section (specimen) registration …
11:11 AM Ticket #1067 (Highlight related items in Case summary) closed by Nicklas Nordborg
fixed
11:11 AM Changeset [5059] by Nicklas Nordborg
References #1067: Highlight related items in Case summary Do not …
10:45 AM Ticket #1070 (The consent registration wizard doesn't check existing consent) closed by Nicklas Nordborg
fixed: (In [5058]) Fixes #1070: The consent registration wizard doesn't check …
10:45 AM Changeset [5058] by Nicklas Nordborg
Fixes #1070: The consent registration wizard doesn't check existing consent
8:26 AM Changeset [5057] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 26, 2018:

12:53 PM Changeset [5056] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
9:39 AM Changeset [5055] by Nicklas Nordborg
9:35 AM Changeset [5054] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:19 AM Changeset [5053] by olle
Refs #1029. FFPE section order form updated for "Yellow label" FFPE …

Oct 25, 2018:

3:05 PM Changeset [5052] by olle
Refs #1029. FFPE section order form wizard updated to keep track of …

Oct 24, 2018:

1:24 PM Changeset [5051] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:21 AM Changeset [5050] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 23, 2018:

3:04 PM Changeset [5049] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 22, 2018:

5:00 PM Changeset [5048] by olle
Refs #1029. FFPE section order form wizard updated to show PAD number …
1:09 PM Changeset [5047] by olle
Refs #1029. FFPE block registration wizard updated by fixing bug in …
11:21 AM Changeset [5046] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
9:16 AM Changeset [5045] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 19, 2018:

4:13 PM Changeset [5044] by olle
Refs #1029. First version of FFPE block registration wizard added: …
1:37 PM Ticket #1071 (Installation wizard doesn't show error message) closed by Nicklas Nordborg
fixed
1:35 PM Changeset [5043] by Nicklas Nordborg
References #1071: Installation wizard doesn't show error message The …
1:30 PM Changeset [5042] by Nicklas Nordborg
References #1071: Installation wizard doesn't show error message …
1:23 PM Changeset [5041] by Nicklas Nordborg
References #1071: Installation wizard doesn't show error message The …
1:20 PM Ticket #1071 (Installation wizard doesn't show error message) created by Nicklas Nordborg
If there is an error (that can't be fixed) in the installation wizard …
12:31 PM Changeset [5040] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:31 AM Changeset [5039] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 18, 2018:

1:29 PM Ticket #1070 (The consent registration wizard doesn't check existing consent) created by Nicklas Nordborg
There is a case in the consent registration wizard that is not handled …

Oct 17, 2018:

5:30 PM Changeset [5038] by Jari Häkkinen
Adding open grid requirement
3:54 PM Changeset [5037] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
1:40 PM Changeset [5036] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
1:32 PM Changeset [5035] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
8:34 AM Changeset [5034] by olle
Refs #1029. Support for an "Arrival operator" annotation on sample …
8:17 AM Changeset [5033] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 16, 2018:

3:35 PM Changeset [5032] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
2:09 PM Changeset [5031] by olle
Refs #1029. Support for a "Yellow label" annotation on sample items …
1:11 PM Changeset [5030] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
12:40 PM Changeset [5029] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?

Oct 15, 2018:

5:01 PM Changeset [5028] by olle
Refs #1029. FFPE block order form wizard updated to print bar codes …
4:31 PM Changeset [5027] by olle
Refs #1029. Base-line registration wizard for input from a …
2:13 PM Ticket #1069 (Reggie should check actual active roles and not just membership) closed by Nicklas Nordborg
fixed: (In [5026]) Fixes #1069: Reggie should check actual active roles and …
2:13 PM Changeset [5026] by Nicklas Nordborg
Fixes #1069: Reggie should check actual active roles and not just …
2:10 PM Ticket #1069 (Reggie should check actual active roles and not just membership) created by Nicklas Nordborg
This can be seen on the start page. Some wizards should be disabled if …
9:06 AM Changeset [5025] by Nicklas Nordborg
References #1054: Even more functionality in the Flagged alignment …
9:03 AM Changeset [5024] by Nicklas Nordborg
References #1054: Even more functionality in the Flagged alignment …

Oct 12, 2018:

8:37 AM Changeset [5023] by Nicklas Nordborg
References #1067: Highlight related items in Case summary Fix scroll …

Oct 11, 2018:

3:13 PM Changeset [5022] by Nicklas Nordborg
References #1067: Highlight related items in Case summary Added a …
9:23 AM Changeset [5021] by Nicklas Nordborg
References #1067: Highlight related items in Case summary The "root …

Oct 10, 2018:

2:49 PM Changeset [5020] by Nicklas Nordborg
References #1067: Highlight related items in Case summary The …
2:48 PM Changeset [5019] by Nicklas Nordborg
References #1067: Highlight related items in Case summary Implemented …
9:34 AM Changeset [5018] by Nicklas Nordborg
References #1054: Even more functionality in the Flagged alignment …

Oct 9, 2018:

3:28 PM Changeset [5017] by Nicklas Nordborg
References #1054: Even more functionality in the Flagged alignment …
9:27 AM Changeset [5016] by olle
Refs #1029. Support for "Whole blood" Boolean annotation for Case item …

Oct 8, 2018:

12:47 PM Changeset [5015] by Nicklas Nordborg
References #1058: Add mBAF analysis step to the Hisat/StringTie?
10:55 AM Ticket #1068 (Add mBAF analysis step to the Hisat/StringTie pipeline) created by Nicklas Nordborg
The Hisat/StringTie pipeline should be extended with a mBAF analysis …
10:34 AM Changeset [5014] by Nicklas Nordborg
References #1054: Even more functionality in the Flagged alignment …
9:48 AM Changeset [5013] by olle
Refs #1029. Support for PAD pre-entry removed. Also, title of consent …
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