Timeline


and

Mar 16, 2018:

2:29 PM Changeset [4705] by nicklas
References #1024: Create annotation type definitions for INCA 2.0 …
2:26 PM Changeset [4704] by nicklas
References #1022: INCA import/statistics wizards changes due to INCA …
1:28 PM Changeset [4703] by nicklas
References #1022: INCA import/statistics wizards changes due to INCA …
11:37 AM Changeset [4702] by nicklas
References #1022: INCA import/statistics wizards changes due to INCA …
9:14 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) closed by nicklas
fixed: (In [4701]) Fixes #1032: Reference date batch update wizard changes …
9:14 AM Changeset [4701] by nicklas
Fixes #1032: Reference date batch update wizard changes due to INCA …
8:28 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) created by nicklas
The reference date batch update wizard need to be updated to use the …
8:20 AM Ticket #1023 (Release exporter changes due to INCA 2.0) closed by nicklas
fixed: (In [4700]) Fixes #1023: Release exporter changes due to INCA 2.0 The …
8:20 AM Changeset [4700] by nicklas
Fixes #1023: Release exporter changes due to INCA 2.0 The release …

Mar 15, 2018:

2:28 PM Changeset [4699] by nicklas
References #1024: Create annotation type definitions for INCA 2.0 …
11:41 AM Changeset [4698] by olle
Refs #1029. New directory META-INF/lib added.
9:50 AM Changeset [4697] by olle
Refs #1029. New Java package directory "pdf" added.
9:02 AM Changeset [4696] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
8:46 AM net.sf.basedb.meludi edited by olle
(diff)
8:39 AM meludi-1.5.0.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.5.0
8:25 AM Changeset [4695] by olle
Creating tagged release MeLuDI v1.5.0

Mar 14, 2018:

2:52 PM Changeset [4694] by nicklas
Changes for future release Labenv 1.7
2:50 PM Milestone LabEnv v1.6 completed
See LabEnv extension page for more information.
2:50 PM PluginDownload edited by nicklas
Released Labenv 1.6 (diff)
2:49 PM net.sf.basedb.labenv edited by nicklas
Released Labenv 1.6 (diff)
2:48 PM labenv-1.6.tar.gz attached to net.sf.basedb.labenv by nicklas
Labenv 1.6
2:46 PM Changeset [4693] by nicklas
Tagging Labenv 1.6
2:45 PM Changeset [4692] by nicklas
Prepering to release Labenv 1.6

Mar 13, 2018:

3:26 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) closed by nicklas
fixed: (In [4691]) Fixes #1030: The "Force update counters" icon on the …
3:26 PM Changeset [4691] by nicklas
Fixes #1030: The "Force update counters" icon on the Reggie start page …
1:28 PM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) created by nicklas
For example, we have matched the genotype of several alignments to …

Mar 12, 2018:

2:49 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) created by nicklas
The time it takes for Reggie to update the counters on the start page …

Mar 9, 2018:

10:31 AM Changeset [4690] by olle
Refs #911. Updates due to version number change to "1.5.0". 1. …

Mar 8, 2018:

1:35 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) created by olle
MeLuDI should be adapted to support the SCAN-B-rec project. Initially …
1:14 PM Ticket #911 (MeLuDI should support multiple projects) closed by olle
fixed: Ticket closed as multiple project support to MeLuDI has been added, …

Feb 27, 2018:

1:12 PM Changeset [4689] by nicklas
References #1025: Release exporter should support StringTie? data …
7:53 AM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) closed by nicklas
fixed: (In [4688]) Fixes #1027: External samples and Stratagene should not be …
7:53 AM Changeset [4688] by nicklas
Fixes #1027: External samples and Stratagene should not be part of …

Feb 26, 2018:

3:31 PM Ticket #1017 (Remove code for handling optional MaskedSequences) closed by nicklas
fixed
3:02 PM Changeset [4687] by nicklas
References #1026: Create wizard for secondary analysis cleanup …
1:25 PM Ticket #1028 (Add support for StringTie data) created by nicklas
The relax server is currently only supporting "cufflinks" raw …
12:58 PM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) created by nicklas
The genotyping qc rely on being able to identify samples belonging to …

Feb 23, 2018:

11:33 AM Changeset [4686] by nicklas
References #1017: Remove code for handling optional MaskedSequences?
9:21 AM Ticket #1026 (Create wizard for secondary analysis cleanup) created by nicklas
There are times when, for example, a demux or alignment needs to be …
9:04 AM Changeset [4685] by nicklas
References #1017: Remove code for handling optional MaskedSequences?
8:23 AM Ticket #1025 (Release exporter should support StringTie data) created by nicklas
The current implementation of the release exporter only supports …

Feb 22, 2018:

3:30 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) created by nicklas
INCA has been updated to version 2.0. Most variables have been …
3:08 PM Ticket #1023 (Release exporter changes due to INCA 2.0) created by nicklas
INCA has been updated to version 2.0. Most variables have been …
3:05 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) created by nicklas
INCA has been updated to version 2.0. Most variables have been …
2:53 PM Ticket #1021 (Add INCA 2.0 columns to the blacklist) created by nicklas
INCA has been updated to version 2.0. Most variables have been …
9:37 AM net.sf.basedb.reggie/notes415 edited by nicklas
More details about deleting alignments (diff)
9:31 AM net.sf.basedb.reggie/HistoryOfReggie edited by nicklas
(diff)
9:30 AM reggie-4.15.png attached to net.sf.basedb.reggie/HistoryOfReggie by nicklas
Reggie 4.15
9:22 AM Changeset [4684] by nicklas
Preparing for future release Reggie 4.16
9:20 AM Milestone Reggie v4.15 completed
See Reggie extension page for more information.
9:19 AM PluginDownload edited by nicklas
Released Reggie 4.15 (diff)
9:18 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 4.15 (diff)
9:16 AM reggie-4.15.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 4.15
9:14 AM Ticket #1009 (Genotype quality control wizard) closed by nicklas
fixed
9:13 AM Changeset [4683] by nicklas
Tagging Reggie 4.15
9:12 AM Changeset [4682] by nicklas
Preparing to release Reggie 4.15

Feb 21, 2018:

3:46 PM Changeset [4681] by nicklas
References #1009: Genotype quality control wizard Removed the …
11:51 AM net.sf.basedb.reggie/notes415 edited by nicklas
Update note related to #1015 (diff)
11:47 AM Changeset [4680] by nicklas
References #1015: Add masking step to Hisat pipeline Added a wizard …

Feb 20, 2018:

9:09 AM net.sf.basedb.reggie edited by nicklas
(diff)
9:07 AM net.sf.basedb.reggie/notes415 edited by nicklas
Added note about BASE update. (diff)

Feb 15, 2018:

11:41 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) closed by nicklas
fixed: (In [4679]) Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
11:41 AM Changeset [4679] by nicklas
Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
11:40 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) created by nicklas
The current value is novel-splicesites.tsv. This should be changed …
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