Timeline



Mar 8, 2018:

1:35 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) created by olle
MeLuDI should be adapted to support the SCAN-B-rec project. Initially …
1:14 PM Ticket #911 (MeLuDI should support multiple projects) closed by olle
fixed: Ticket closed as multiple project support to MeLuDI has been added, …

Feb 27, 2018:

1:12 PM Changeset [4689] by Nicklas Nordborg
References #1025: Release exporter should support StringTie? data …
7:53 AM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) closed by Nicklas Nordborg
fixed: (In [4688]) Fixes #1027: External samples and Stratagene should not be …
7:53 AM Changeset [4688] by Nicklas Nordborg
Fixes #1027: External samples and Stratagene should not be part of …

Feb 26, 2018:

3:31 PM Ticket #1017 (Remove code for handling optional MaskedSequences) closed by Nicklas Nordborg
fixed
3:02 PM Changeset [4687] by Nicklas Nordborg
References #1026: Create wizard for secondary analysis cleanup …
1:25 PM Ticket #1028 (Add support for StringTie data) created by Nicklas Nordborg
The relax server is currently only supporting "cufflinks" raw …
12:58 PM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) created by Nicklas Nordborg
The genotyping qc rely on being able to identify samples belonging to …

Feb 23, 2018:

11:33 AM Changeset [4686] by Nicklas Nordborg
References #1017: Remove code for handling optional MaskedSequences?
9:21 AM Ticket #1026 (Create wizard for secondary analysis cleanup) created by Nicklas Nordborg
There are times when, for example, a demux or alignment needs to be …
9:04 AM Changeset [4685] by Nicklas Nordborg
References #1017: Remove code for handling optional MaskedSequences?
8:23 AM Ticket #1025 (Release exporter should support StringTie data) created by Nicklas Nordborg
The current implementation of the release exporter only supports …

Feb 22, 2018:

3:30 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) created by Nicklas Nordborg
INCA has been updated to version 2.0. Most variables have been …
3:08 PM Ticket #1023 (Release exporter changes due to INCA 2.0) created by Nicklas Nordborg
INCA has been updated to version 2.0. Most variables have been …
3:05 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) created by Nicklas Nordborg
INCA has been updated to version 2.0. Most variables have been …
2:53 PM Ticket #1021 (Add INCA 2.0 columns to the blacklist) created by Nicklas Nordborg
INCA has been updated to version 2.0. Most variables have been …
9:37 AM net.sf.basedb.reggie/notes415 edited by Nicklas Nordborg
More details about deleting alignments (diff)
9:31 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
(diff)
9:30 AM reggie-4.15.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 4.15
9:22 AM Changeset [4684] by Nicklas Nordborg
Preparing for future release Reggie 4.16
9:20 AM Milestone Reggie v4.15 completed
See Reggie extension page for more information.
9:19 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.15 (diff)
9:18 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.15 (diff)
9:16 AM reggie-4.15.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.15
9:14 AM Ticket #1009 (Genotype quality control wizard) closed by Nicklas Nordborg
fixed
9:13 AM Changeset [4683] by Nicklas Nordborg
Tagging Reggie 4.15
9:12 AM Changeset [4682] by Nicklas Nordborg
Preparing to release Reggie 4.15

Feb 21, 2018:

3:46 PM Changeset [4681] by Nicklas Nordborg
References #1009: Genotype quality control wizard Removed the …
11:51 AM net.sf.basedb.reggie/notes415 edited by Nicklas Nordborg
Update note related to #1015 (diff)
11:47 AM Changeset [4680] by Nicklas Nordborg
References #1015: Add masking step to Hisat pipeline Added a wizard …

Feb 20, 2018:

9:09 AM net.sf.basedb.reggie edited by Nicklas Nordborg
(diff)
9:07 AM net.sf.basedb.reggie/notes415 edited by Nicklas Nordborg
Added note about BASE update. (diff)

Feb 15, 2018:

11:41 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) closed by Nicklas Nordborg
fixed: (In [4679]) Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
11:41 AM Changeset [4679] by Nicklas Nordborg
Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
11:40 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) created by Nicklas Nordborg
The current value is novel-splicesites.tsv. This should be changed …

Feb 12, 2018:

9:53 AM Ticket #1018 (Updates to HaplotypeCaller step) closed by Nicklas Nordborg
fixed
9:52 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) closed by Nicklas Nordborg
fixed
9:51 AM Changeset [4678] by Nicklas Nordborg
References #1009: Genotype quality control wizard Layout changes to …

Feb 8, 2018:

1:49 PM net.sf.basedb.reggie/notes415 edited by Nicklas Nordborg
Adding more update notes related to #1009, #1015, #1016 and #1018 (diff)
1:31 PM Ticket #1019 (Secondary analysis wizards should sort items by library plate order) closed by Nicklas Nordborg
fixed: (In [4677]) Fixes #1019: Secondary analysis wizards should sort items …
1:31 PM Changeset [4677] by Nicklas Nordborg
Fixes #1019: Secondary analysis wizards should sort items by library …
12:58 PM Ticket #1019 (Secondary analysis wizards should sort items by library plate order) created by Nicklas Nordborg
The "Genotype quality control" wizard already uses this order since it …
12:51 PM Changeset [4676] by Nicklas Nordborg
References #1018 and #1015. Adding "reads after mask" and HET …
12:46 PM Changeset [4675] by Nicklas Nordborg
References #1018: Updates to HaplotypeCaller? step The …
9:09 AM Changeset [4674] by Nicklas Nordborg
References #1016: Implement Stringtie step in the Hisat pipeline …
8:33 AM Changeset [4673] by Nicklas Nordborg
References #1016: Implement Stringtie step in the Hisat pipeline …

Feb 7, 2018:

11:51 AM Changeset [4672] by Nicklas Nordborg
References #1018: Updates to HaplotypeCaller? step Updated the SNP …
11:46 AM Changeset [4671] by Nicklas Nordborg
References #1009: Genotype quality control wizard Several changes to …
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