Timeline


and

Feb 22, 2018:

3:30 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) created by nicklas
INCA has been updated to version 2.0. Most variables have been …
3:08 PM Ticket #1023 (Release exporter changes due to INCA 2.0) created by nicklas
INCA has been updated to version 2.0. Most variables have been …
3:05 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) created by nicklas
INCA has been updated to version 2.0. Most variables have been …
2:53 PM Ticket #1021 (Add INCA 2.0 columns to the blacklist) created by nicklas
INCA has been updated to version 2.0. Most variables have been …
9:37 AM net.sf.basedb.reggie/notes415 edited by nicklas
More details about deleting alignments (diff)
9:31 AM net.sf.basedb.reggie/HistoryOfReggie edited by nicklas
(diff)
9:30 AM reggie-4.15.png attached to net.sf.basedb.reggie/HistoryOfReggie by nicklas
Reggie 4.15
9:22 AM Changeset [4684] by nicklas
Preparing for future release Reggie 4.16
9:20 AM Milestone Reggie v4.15 completed
See Reggie extension page for more information.
9:19 AM PluginDownload edited by nicklas
Released Reggie 4.15 (diff)
9:18 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 4.15 (diff)
9:16 AM reggie-4.15.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 4.15
9:14 AM Ticket #1009 (Genotype quality control wizard) closed by nicklas
fixed
9:13 AM Changeset [4683] by nicklas
Tagging Reggie 4.15
9:12 AM Changeset [4682] by nicklas
Preparing to release Reggie 4.15

Feb 21, 2018:

3:46 PM Changeset [4681] by nicklas
References #1009: Genotype quality control wizard Removed the …
11:51 AM net.sf.basedb.reggie/notes415 edited by nicklas
Update note related to #1015 (diff)
11:47 AM Changeset [4680] by nicklas
References #1015: Add masking step to Hisat pipeline Added a wizard …

Feb 20, 2018:

9:09 AM net.sf.basedb.reggie edited by nicklas
(diff)
9:07 AM net.sf.basedb.reggie/notes415 edited by nicklas
Added note about BASE update. (diff)

Feb 15, 2018:

11:41 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) closed by nicklas
fixed: (In [4679]) Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
11:41 AM Changeset [4679] by nicklas
Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
11:40 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) created by nicklas
The current value is novel-splicesites.tsv. This should be changed …

Feb 12, 2018:

9:53 AM Ticket #1018 (Updates to HaplotypeCaller step) closed by nicklas
fixed
9:52 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) closed by nicklas
fixed
9:51 AM Changeset [4678] by nicklas
References #1009: Genotype quality control wizard Layout changes to …

Feb 8, 2018:

1:49 PM net.sf.basedb.reggie/notes415 edited by nicklas
Adding more update notes related to #1009, #1015, #1016 and #1018 (diff)
1:31 PM Ticket #1019 (Secondary analysis wizards should sort items by library plate order) closed by nicklas
fixed: (In [4677]) Fixes #1019: Secondary analysis wizards should sort items …
1:31 PM Changeset [4677] by nicklas
Fixes #1019: Secondary analysis wizards should sort items by library …
12:58 PM Ticket #1019 (Secondary analysis wizards should sort items by library plate order) created by nicklas
The "Genotype quality control" wizard already uses this order since it …
12:51 PM Changeset [4676] by nicklas
References #1018 and #1015. Adding "reads after mask" and HET …
12:46 PM Changeset [4675] by nicklas
References #1018: Updates to HaplotypeCaller? step The …
9:09 AM Changeset [4674] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …
8:33 AM Changeset [4673] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …

Feb 7, 2018:

11:51 AM Changeset [4672] by nicklas
References #1018: Updates to HaplotypeCaller? step Updated the SNP …
11:46 AM Changeset [4671] by nicklas
References #1009: Genotype quality control wizard Several changes to …

Feb 5, 2018:

12:51 PM Changeset [4670] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …

Feb 2, 2018:

1:56 PM Changeset [4669] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …

Feb 1, 2018:

2:19 PM Changeset [4668] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline More …
1:01 PM Changeset [4667] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …
11:36 AM Changeset [4666] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …

Jan 31, 2018:

2:42 PM Changeset [4665] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …

Jan 30, 2018:

2:20 PM Changeset [4664] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline A …

Jan 29, 2018:

2:36 PM net.sf.basedb.reggie/notes415 created by nicklas
Added update notes for Reggie 4.15
2:30 PM Changeset [4663] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …
1:57 PM Changeset [4662] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …
12:47 PM Changeset [4661] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …
8:36 AM Changeset [4660] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline The …

Jan 26, 2018:

1:35 PM Changeset [4659] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …
12:00 PM Changeset [4658] by nicklas
References #1018: Updates to HaplotypeCaller? step Changed the …
9:35 AM Ticket #1018 (Updates to HaplotypeCaller step) created by nicklas
#1001 introduced the HaplotypeCaller step for genotyping. We should …
9:02 AM Ticket #1015 (Add masking step to Hisat pipeline) closed by nicklas
fixed: (In [4657]) Fixes #1015: Add masking step to Hisat pipeline The …
9:02 AM Changeset [4657] by nicklas
Fixes #1015: Add masking step to Hisat pipeline The PM_READS …
8:58 AM Ticket #1017 (Remove code for handling optional MaskedSequences) created by nicklas
When the masking step has been introduced to the Hisat pipeline again …

Jan 24, 2018:

2:20 PM Changeset [4656] by nicklas
References #1015: Add masking step to Hisat pipeline The masking is …
9:08 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) created by nicklas
This is similar to the Cufflinks step in the legacy pipeline. It will …
9:05 AM Ticket #1015 (Add masking step to Hisat pipeline) created by nicklas
The same masking that is done in the legacy pipeline before Tophat is …
Note: See TracTimeline for information about the timeline view.