Timeline


and

Jan 26, 2018:

1:35 PM Changeset [4659] by nicklas
References #1016: Implement Stringtie step in the Hisat pipeline …
12:00 PM Changeset [4658] by nicklas
References #1018: Updates to HaplotypeCaller? step Changed the …
9:35 AM Ticket #1018 (Updates to HaplotypeCaller step) created by nicklas
#1001 introduced the HaplotypeCaller step for genotyping. We should …
9:02 AM Ticket #1015 (Add masking step to Hisat pipeline) closed by nicklas
fixed: (In [4657]) Fixes #1015: Add masking step to Hisat pipeline The …
9:02 AM Changeset [4657] by nicklas
Fixes #1015: Add masking step to Hisat pipeline The PM_READS …
8:58 AM Ticket #1017 (Remove code for handling optional MaskedSequences) created by nicklas
When the masking step has been introduced to the Hisat pipeline again …

Jan 24, 2018:

2:20 PM Changeset [4656] by nicklas
References #1015: Add masking step to Hisat pipeline The masking is …
9:08 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) created by nicklas
This is similar to the Cufflinks step in the legacy pipeline. It will …
9:05 AM Ticket #1015 (Add masking step to Hisat pipeline) created by nicklas
The same masking that is done in the legacy pipeline before Tophat is …

Jan 18, 2018:

9:10 AM Changeset [4655] by nicklas
Preparing for future release Reggie 4.15
9:07 AM Milestone Reggie v4.14 completed
See Reggie extension page for more information.
9:07 AM PluginDownload edited by nicklas
Released Reggie 4.14 (diff)
9:06 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 4.14 (diff)
9:05 AM reggie-4.14.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 4.14
9:04 AM Changeset [4654] by nicklas
Tagging Reggie 4.14
9:03 AM Changeset [4653] by nicklas
Preparing to release Reggie 4.14

Jan 17, 2018:

8:54 AM Ticket #1008 (The release exporter should be able to export expression data from the ...) closed by nicklas
fixed: Ready for testing.
8:43 AM Changeset [4652] by nicklas
References #1009: Genotype quality control wizard Flagged this wizard …

Jan 8, 2018:

3:35 PM Ticket #1014 (Add column definition for "LibPlate" to derived bioassays and raw ...) closed by nicklas
fixed: (In [4651]) Fixes #1014: Add column definition for "LibPlate?" to …
3:35 PM Changeset [4651] by nicklas
Fixes #1014: Add column definition for "LibPlate?" to derived bioassays …
11:38 AM Ticket #1013 (Not enough RNA in some cases when the remaining quantity is between ...) closed by nicklas
fixed: (In [4650]) Fixes #1013: Not enough RNA in some cases when the …
11:38 AM Changeset [4650] by nicklas
Fixes #1013: Not enough RNA in some cases when the remaining quantity …
Note: See TracTimeline for information about the timeline view.