Timeline


and

Dec 15, 2017:

2:51 PM Changeset [4648] by nicklas
References #1009: Genotype quality control wizard Added …

Dec 14, 2017:

9:56 AM Changeset [4647] by nicklas
References #1009: Genotype quality control wizard Adding file that …
9:56 AM Changeset [4646] by nicklas
References #1009: Genotype quality control wizard Started with the …

Dec 12, 2017:

8:26 AM Ticket #1012 (Stratagene secondary analysis data files should be saved to the ...) closed by nicklas
fixed: (In [4645]) Fixes #1012: Stratagene secondary analysis data files …
8:26 AM Changeset [4645] by nicklas
Fixes #1012: Stratagene secondary analysis data files should be saved …

Dec 11, 2017:

12:33 PM Ticket #1011 (Demux warning about a library with low PF_READS should include barcode) closed by nicklas
fixed: (In [4644]) Fixes #1011: Demux warning about a library with low …
12:33 PM Changeset [4644] by nicklas
Fixes #1011: Demux warning about a library with low PF_READS should …

Dec 6, 2017:

11:49 AM Ticket #1012 (Stratagene secondary analysis data files should be saved to the ...) created by nicklas
11:47 AM Ticket #1011 (Demux warning about a library with low PF_READS should include barcode) created by nicklas
Warnings for a demux are typically issued as: […] It would be …
11:36 AM Ticket #1010 (2by16offset is missing from PoolSchema annotation) closed by nicklas
fixed: (In [4643]) Fixes #1010: 2by16offset is missing from PoolSchema? annotation
11:36 AM Changeset [4643] by nicklas
Fixes #1010: 2by16offset is missing from PoolSchema? annotation
10:15 AM Ticket #1010 (2by16offset is missing from PoolSchema annotation) created by nicklas
Trying to use the new Pool schema '2by16offset' that was implemented …

Nov 28, 2017:

8:58 AM Changeset [4642] by nicklas
References #1009: Genotype quality control wizard Started with the …

Nov 27, 2017:

9:59 AM Ticket #1009 (Genotype quality control wizard) created by nicklas
Since #1001 we are creating a VCF file with genotypes for 51 SNPs. A …
9:31 AM Changeset [4641] by nicklas
References #1008: The release exporter should be able to export …

Nov 23, 2017:

8:55 AM Changeset [4640] by nicklas
Changes for future release Relax 1.2
8:55 AM Changeset [4639] by nicklas
Changes for future release Reggie 4.14
8:53 AM Milestone Relax v1.1 completed
See Relax extension page for more information.
8:53 AM PluginDownload edited by nicklas
Released Relax 1.1 (diff)
8:52 AM net.sf.basedb.relax edited by nicklas
Released Relax 1.1 (diff)
8:51 AM relax-1.1.tar.gz attached to net.sf.basedb.relax by nicklas
Relax 1.1
8:49 AM Changeset [4638] by nicklas
Tagging Relax 1.1
8:48 AM Changeset [4637] by nicklas
Preparing to release Relax 1.1
8:40 AM net.sf.basedb.reggie/HistoryOfReggie edited by nicklas
Released Reggie 4.13 (diff)
8:40 AM reggie-4.13.png attached to net.sf.basedb.reggie/HistoryOfReggie by nicklas
Reggie 4.13
8:31 AM Milestone Reggie v4.13 completed
See Reggie extension page for more information.
8:30 AM PluginDownload edited by nicklas
Released Reggie 4.13 (diff)
8:29 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 4.13 (diff)
8:28 AM reggie-4.13.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 4.13
8:27 AM net.sf.basedb.reggie/notes413 edited by nicklas
(diff)
8:19 AM Changeset [4636] by nicklas
Tagging Reggie 4.13
8:18 AM Changeset [4635] by nicklas
Preparing to release Reggie 4.13
8:15 AM Tickets #994,​987,​1006 batch updated by nicklas
fixed
8:15 AM Tickets #1001,​1005 batch updated by nicklas
fixed

Nov 22, 2017:

2:12 PM Changeset [4634] by nicklas
References #1006: External data filtering and mapping wizard It …
2:08 PM Changeset [4633] by nicklas
References #1005: External data filtering and mapping wizard Cleaning …
1:45 PM Changeset [4632] by nicklas
References #1006: External data filtering and mapping wizard Added …

Nov 21, 2017:

2:35 PM Changeset [4631] by nicklas
References #1006: External data filtering and mapping wizard Moving …
11:29 AM Changeset [4630] by nicklas
References #1006: External data filtering and mapping wizard …
9:28 AM Changeset [4629] by nicklas
References #994: Level 3 exporter Removed debug code (the plug-in …
9:27 AM Changeset [4628] by nicklas
References #987: Cohort exporter plugin Removed debug code (the …
9:09 AM Changeset [4627] by nicklas
References #1005: External data filtering and mapping wizard Added a …

Nov 17, 2017:

2:22 PM Ticket #1008 (The release exporter should be able to export expression data from the ...) created by nicklas
Since #984 data from the cufflinks file are no longer imported to the …
2:08 PM Ticket #1007 (The release exporter should sort raw bioassay by external id when the ...) closed by nicklas
fixed: (In [4626]) Fixes #1007: The release exporter should sort raw bioassay …
2:08 PM Changeset [4626] by nicklas
Fixes #1007: The release exporter should sort raw bioassay by external …
12:38 PM Ticket #1002 (The release exporter should ignore directories and files that it has ...) closed by nicklas
fixed: (In [4625]) Fixes #1002: The release exporter should ignore …
12:38 PM Changeset [4625] by nicklas
Fixes #1002: The release exporter should ignore directories and files …
11:05 AM Ticket #1007 (The release exporter should sort raw bioassay by external id when the ...) created by nicklas
The raw bioassays to export are usually sorted by name in all files. …
10:41 AM Ticket #1003 (Add support for disabling/pausing a pipeline) closed by nicklas
fixed: (In [4624]) Fixes #1003: Add support for disabling/pausing a pipeline …
10:41 AM Changeset [4624] by nicklas
Fixes #1003: Add support for disabling/pausing a pipeline The Hisat …
7:49 AM Ticket #1004 (Auto-confirmation after demux should start Tophat/Hisat jobs ...) closed by nicklas
fixed: (In [4623]) Fixes #1004: Auto-confirmation after demux should start …
7:49 AM Changeset [4623] by nicklas
Fixes #1004: Auto-confirmation after demux should start Tophat/Hisat?

Nov 16, 2017:

1:17 PM Ticket #1006 (External data filtering and mapping wizard) created by nicklas
See for more information #1005. The file that is created by the …
1:14 PM Ticket #1005 (External data filtering and mapping wizard) created by nicklas
The use case is that we have a text file with some kind of personal …
12:58 PM Ticket #1004 (Auto-confirmation after demux should start Tophat/Hisat jobs ...) created by nicklas
The DemuxAutoConfirmer code that starts Tophat and Hisat alignment …
12:54 PM Ticket #1003 (Add support for disabling/pausing a pipeline) created by nicklas
This is mainly for auto-confirmation purposes. It would be useful to …
12:47 PM Changeset [4622] by nicklas
References #1001: Add HaplotypeCaller? to Hisat align step VCF …
11:08 AM Changeset [4621] by nicklas
References #1001: Add HaplotypeCaller? to Hisat align step Add …
8:10 AM Changeset [4620] by nicklas
References #1001: Add HaplotypeCaller? to Hisat align step Added …
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