Timeline



Dec 14, 2017:

9:56 AM Changeset [4647] by Nicklas Nordborg
References #1009: Genotype quality control wizard Adding file that …
9:56 AM Changeset [4646] by Nicklas Nordborg
References #1009: Genotype quality control wizard Started with the …

Dec 12, 2017:

8:26 AM Ticket #1012 (Stratagene secondary analysis data files should be saved to the ...) closed by Nicklas Nordborg
fixed: (In [4645]) Fixes #1012: Stratagene secondary analysis data files …
8:26 AM Changeset [4645] by Nicklas Nordborg
Fixes #1012: Stratagene secondary analysis data files should be saved …

Dec 11, 2017:

12:33 PM Ticket #1011 (Demux warning about a library with low PF_READS should include barcode) closed by Nicklas Nordborg
fixed: (In [4644]) Fixes #1011: Demux warning about a library with low …
12:33 PM Changeset [4644] by Nicklas Nordborg
Fixes #1011: Demux warning about a library with low PF_READS should …

Dec 6, 2017:

11:49 AM Ticket #1012 (Stratagene secondary analysis data files should be saved to the ...) created by Nicklas Nordborg
11:47 AM Ticket #1011 (Demux warning about a library with low PF_READS should include barcode) created by Nicklas Nordborg
Warnings for a demux are typically issued as: […] It would be …
11:36 AM Ticket #1010 (2by16offset is missing from PoolSchema annotation) closed by Nicklas Nordborg
fixed: (In [4643]) Fixes #1010: 2by16offset is missing from PoolSchema? annotation
11:36 AM Changeset [4643] by Nicklas Nordborg
Fixes #1010: 2by16offset is missing from PoolSchema? annotation
10:15 AM Ticket #1010 (2by16offset is missing from PoolSchema annotation) created by Nicklas Nordborg
Trying to use the new Pool schema '2by16offset' that was implemented …

Nov 28, 2017:

8:58 AM Changeset [4642] by Nicklas Nordborg
References #1009: Genotype quality control wizard Started with the …

Nov 27, 2017:

9:59 AM Ticket #1009 (Genotype quality control wizard) created by Nicklas Nordborg
Since #1001 we are creating a VCF file with genotypes for 51 SNPs. A …
9:31 AM Changeset [4641] by Nicklas Nordborg
References #1008: The release exporter should be able to export …

Nov 23, 2017:

8:55 AM Changeset [4640] by Nicklas Nordborg
Changes for future release Relax 1.2
8:55 AM Changeset [4639] by Nicklas Nordborg
Changes for future release Reggie 4.14
8:53 AM Milestone Relax v1.1 completed
See Relax extension page for more information.
8:53 AM PluginDownload edited by Nicklas Nordborg
Released Relax 1.1 (diff)
8:52 AM net.sf.basedb.relax edited by Nicklas Nordborg
Released Relax 1.1 (diff)
8:51 AM relax-1.1.tar.gz attached to net.sf.basedb.relax by Nicklas Nordborg
Relax 1.1
8:49 AM Changeset [4638] by Nicklas Nordborg
Tagging Relax 1.1
8:48 AM Changeset [4637] by Nicklas Nordborg
Preparing to release Relax 1.1
8:40 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
Released Reggie 4.13 (diff)
8:40 AM reggie-4.13.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 4.13
8:31 AM Milestone Reggie v4.13 completed
See Reggie extension page for more information.
8:30 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.13 (diff)
8:29 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.13 (diff)
8:28 AM reggie-4.13.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.13
8:27 AM net.sf.basedb.reggie/notes413 edited by Nicklas Nordborg
(diff)
8:19 AM Changeset [4636] by Nicklas Nordborg
Tagging Reggie 4.13
8:18 AM Changeset [4635] by Nicklas Nordborg
Preparing to release Reggie 4.13
8:15 AM Tickets #994,​987,​1006 batch updated by Nicklas Nordborg
fixed
8:15 AM Tickets #1001,​1005 batch updated by Nicklas Nordborg
fixed

Nov 22, 2017:

2:12 PM Changeset [4634] by Nicklas Nordborg
References #1006: External data filtering and mapping wizard It …
2:08 PM Changeset [4633] by Nicklas Nordborg
References #1005: External data filtering and mapping wizard Cleaning …
1:45 PM Changeset [4632] by Nicklas Nordborg
References #1006: External data filtering and mapping wizard Added …

Nov 21, 2017:

2:35 PM Changeset [4631] by Nicklas Nordborg
References #1006: External data filtering and mapping wizard Moving …
11:29 AM Changeset [4630] by Nicklas Nordborg
References #1006: External data filtering and mapping wizard …
9:28 AM Changeset [4629] by Nicklas Nordborg
References #994: Level 3 exporter Removed debug code (the plug-in …
9:27 AM Changeset [4628] by Nicklas Nordborg
References #987: Cohort exporter plugin Removed debug code (the …
9:09 AM Changeset [4627] by Nicklas Nordborg
References #1005: External data filtering and mapping wizard Added a …

Nov 17, 2017:

2:22 PM Ticket #1008 (The release exporter should be able to export expression data from the ...) created by Nicklas Nordborg
Since #984 data from the cufflinks file are no longer imported to the …
2:08 PM Ticket #1007 (The release exporter should sort raw bioassay by external id when the ...) closed by Nicklas Nordborg
fixed: (In [4626]) Fixes #1007: The release exporter should sort raw bioassay …
2:08 PM Changeset [4626] by Nicklas Nordborg
Fixes #1007: The release exporter should sort raw bioassay by external …
12:38 PM Ticket #1002 (The release exporter should ignore directories and files that it has ...) closed by Nicklas Nordborg
fixed: (In [4625]) Fixes #1002: The release exporter should ignore …
12:38 PM Changeset [4625] by Nicklas Nordborg
Fixes #1002: The release exporter should ignore directories and files …
11:05 AM Ticket #1007 (The release exporter should sort raw bioassay by external id when the ...) created by Nicklas Nordborg
The raw bioassays to export are usually sorted by name in all files. …
10:41 AM Ticket #1003 (Add support for disabling/pausing a pipeline) closed by Nicklas Nordborg
fixed: (In [4624]) Fixes #1003: Add support for disabling/pausing a pipeline …
10:41 AM Changeset [4624] by Nicklas Nordborg
Fixes #1003: Add support for disabling/pausing a pipeline The Hisat …
7:49 AM Ticket #1004 (Auto-confirmation after demux should start Tophat/Hisat jobs ...) closed by Nicklas Nordborg
fixed: (In [4623]) Fixes #1004: Auto-confirmation after demux should start …
7:49 AM Changeset [4623] by Nicklas Nordborg
Fixes #1004: Auto-confirmation after demux should start Tophat/Hisat?

Nov 16, 2017:

1:17 PM Ticket #1006 (External data filtering and mapping wizard) created by Nicklas Nordborg
See for more information #1005. The file that is created by the …
1:14 PM Ticket #1005 (External data filtering and mapping wizard) created by Nicklas Nordborg
The use case is that we have a text file with some kind of personal …
12:58 PM Ticket #1004 (Auto-confirmation after demux should start Tophat/Hisat jobs ...) created by Nicklas Nordborg
The DemuxAutoConfirmer code that starts Tophat and Hisat alignment …
12:54 PM Ticket #1003 (Add support for disabling/pausing a pipeline) created by Nicklas Nordborg
This is mainly for auto-confirmation purposes. It would be useful to …
12:47 PM Changeset [4622] by Nicklas Nordborg
References #1001: Add HaplotypeCaller? to Hisat align step VCF …
11:08 AM Changeset [4621] by Nicklas Nordborg
References #1001: Add HaplotypeCaller? to Hisat align step Add …
8:10 AM Changeset [4620] by Nicklas Nordborg
References #1001: Add HaplotypeCaller? to Hisat align step Added …
Note: See TracTimeline for information about the timeline view.