Timeline


and

Nov 23, 2017:

8:55 AM Changeset [4640] by nicklas
Changes for future release Relax 1.2
8:55 AM Changeset [4639] by nicklas
Changes for future release Reggie 4.14
8:53 AM Milestone Relax v1.1 completed
See Relax extension page for more information.
8:53 AM PluginDownload edited by nicklas
Released Relax 1.1 (diff)
8:52 AM net.sf.basedb.relax edited by nicklas
Released Relax 1.1 (diff)
8:51 AM relax-1.1.tar.gz attached to net.sf.basedb.relax by nicklas
Relax 1.1
8:49 AM Changeset [4638] by nicklas
Tagging Relax 1.1
8:48 AM Changeset [4637] by nicklas
Preparing to release Relax 1.1
8:40 AM net.sf.basedb.reggie/HistoryOfReggie edited by nicklas
Released Reggie 4.13 (diff)
8:40 AM reggie-4.13.png attached to net.sf.basedb.reggie/HistoryOfReggie by nicklas
Reggie 4.13
8:31 AM Milestone Reggie v4.13 completed
See Reggie extension page for more information.
8:30 AM PluginDownload edited by nicklas
Released Reggie 4.13 (diff)
8:29 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 4.13 (diff)
8:28 AM reggie-4.13.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 4.13
8:27 AM net.sf.basedb.reggie/notes413 edited by nicklas
(diff)
8:19 AM Changeset [4636] by nicklas
Tagging Reggie 4.13
8:18 AM Changeset [4635] by nicklas
Preparing to release Reggie 4.13
8:15 AM Tickets #994,​987,​1006 batch updated by nicklas
fixed
8:15 AM Tickets #1001,​1005 batch updated by nicklas
fixed

Nov 22, 2017:

2:12 PM Changeset [4634] by nicklas
References #1006: External data filtering and mapping wizard It …
2:08 PM Changeset [4633] by nicklas
References #1005: External data filtering and mapping wizard Cleaning …
1:45 PM Changeset [4632] by nicklas
References #1006: External data filtering and mapping wizard Added …

Nov 21, 2017:

2:35 PM Changeset [4631] by nicklas
References #1006: External data filtering and mapping wizard Moving …
11:29 AM Changeset [4630] by nicklas
References #1006: External data filtering and mapping wizard …
9:28 AM Changeset [4629] by nicklas
References #994: Level 3 exporter Removed debug code (the plug-in …
9:27 AM Changeset [4628] by nicklas
References #987: Cohort exporter plugin Removed debug code (the …
9:09 AM Changeset [4627] by nicklas
References #1005: External data filtering and mapping wizard Added a …

Nov 17, 2017:

2:22 PM Ticket #1008 (The release exporter should be able to export expression data from the ...) created by nicklas
Since #984 data from the cufflinks file are no longer imported to the …
2:08 PM Ticket #1007 (The release exporter should sort raw bioassay by external id when the ...) closed by nicklas
fixed: (In [4626]) Fixes #1007: The release exporter should sort raw bioassay …
2:08 PM Changeset [4626] by nicklas
Fixes #1007: The release exporter should sort raw bioassay by external …
12:38 PM Ticket #1002 (The release exporter should ignore directories and files that it has ...) closed by nicklas
fixed: (In [4625]) Fixes #1002: The release exporter should ignore …
12:38 PM Changeset [4625] by nicklas
Fixes #1002: The release exporter should ignore directories and files …
11:05 AM Ticket #1007 (The release exporter should sort raw bioassay by external id when the ...) created by nicklas
The raw bioassays to export are usually sorted by name in all files. …
10:41 AM Ticket #1003 (Add support for disabling/pausing a pipeline) closed by nicklas
fixed: (In [4624]) Fixes #1003: Add support for disabling/pausing a pipeline …
10:41 AM Changeset [4624] by nicklas
Fixes #1003: Add support for disabling/pausing a pipeline The Hisat …
7:49 AM Ticket #1004 (Auto-confirmation after demux should start Tophat/Hisat jobs ...) closed by nicklas
fixed: (In [4623]) Fixes #1004: Auto-confirmation after demux should start …
7:49 AM Changeset [4623] by nicklas
Fixes #1004: Auto-confirmation after demux should start Tophat/Hisat?

Nov 16, 2017:

1:17 PM Ticket #1006 (External data filtering and mapping wizard) created by nicklas
See for more information #1005. The file that is created by the …
1:14 PM Ticket #1005 (External data filtering and mapping wizard) created by nicklas
The use case is that we have a text file with some kind of personal …
12:58 PM Ticket #1004 (Auto-confirmation after demux should start Tophat/Hisat jobs ...) created by nicklas
The DemuxAutoConfirmer code that starts Tophat and Hisat alignment …
12:54 PM Ticket #1003 (Add support for disabling/pausing a pipeline) created by nicklas
This is mainly for auto-confirmation purposes. It would be useful to …
12:47 PM Changeset [4622] by nicklas
References #1001: Add HaplotypeCaller? to Hisat align step VCF …
11:08 AM Changeset [4621] by nicklas
References #1001: Add HaplotypeCaller? to Hisat align step Add …
8:10 AM Changeset [4620] by nicklas
References #1001: Add HaplotypeCaller? to Hisat align step Added …

Nov 13, 2017:

2:41 PM Changeset [4619] by nicklas
References #1001: Add HaplotypeCaller? to Hisat align step Added VCF …
12:41 PM Changeset [4618] by nicklas
References #1001: Add HaplotypeCaller? to Hisat align step The VCF …
11:53 AM net.sf.basedb.reggie/notes413 created by nicklas
Create update notes for Reggie 4.13
10:14 AM Ticket #1002 (The release exporter should ignore directories and files that it has ...) created by nicklas
The release exporter is creating scripts for lining data files to …

Nov 10, 2017:

9:03 AM Ticket #1001 (Add HaplotypeCaller to Hisat align step) created by nicklas
In the Hisat alignment pipeline we should also run HaplotypeCaller to …

Oct 25, 2017:

8:29 AM Changeset [4617] by nicklas
Preparing for future release Reggie 4.13.
8:27 AM Milestone Reggie v4.12 completed
See Reggie extension page for more information.
8:27 AM Ticket #997 (Implement new secondary analysis pipeline) closed by nicklas
fixed
8:27 AM PluginDownload edited by nicklas
Released Reggie 4.12 (diff)
8:26 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 4.12 (diff)
8:24 AM reggie-4.12.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 4.12
8:22 AM Changeset [4616] by nicklas
Tagging Reggie 4.12
8:21 AM Changeset [4615] by nicklas
Preparing to release Reggie 4.12
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