Timeline



Jun 26, 2017:

12:54 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
(In [4542]) References #983: Merge the Tophat alignment and Cufflinks …
12:53 PM Changeset [4542] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
8:45 AM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
Status changed
8:45 AM Ticket #979 (Define and import Pilot report annotations) closed by Nicklas Nordborg
fixed
8:44 AM Ticket #984 (Remove the raw data import step for Cufflinks data) closed by Nicklas Nordborg
fixed
8:33 AM Ticket #984 (Remove the raw data import step for Cufflinks data) updated by Nicklas Nordborg
(In [4541]) References #984: Remove the raw data import step for …
8:33 AM Changeset [4541] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …

Jun 22, 2017:

2:28 PM Ticket #984 (Remove the raw data import step for Cufflinks data) updated by Nicklas Nordborg
(In [4540]) References #984: Remove the raw data import step for …
2:28 PM Changeset [4540] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …
12:46 PM Ticket #984 (Remove the raw data import step for Cufflinks data) updated by Nicklas Nordborg
(In [4539]) References #984: Remove the raw data import step for …
12:46 PM Changeset [4539] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …
10:38 AM Ticket #984 (Remove the raw data import step for Cufflinks data) updated by Nicklas Nordborg
Status changed
10:37 AM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) closed by Nicklas Nordborg
fixed: (In [4538]) Fixes #985: Re-design the gene report generator so that it …
10:37 AM Changeset [4538] by Nicklas Nordborg
Fixes #985: Re-design the gene report generator so that it can produce …

Jun 21, 2017:

2:22 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) updated by Nicklas Nordborg
Status changed
2:22 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) updated by Nicklas Nordborg
Description changed
2:22 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) updated by Nicklas Nordborg
Summary changed
Turned out that the pilot report is already using only the cufflinks …
2:20 PM Ticket #979 (Define and import Pilot report annotations) updated by Nicklas Nordborg
(In [4537]) References #979: Define and import Pilot report …
2:20 PM Changeset [4537] by Nicklas Nordborg
References #979: Define and import Pilot report annotations The pilot …
11:29 AM Ticket #979 (Define and import Pilot report annotations) updated by Nicklas Nordborg
(In [4536]) References #979: Define and import Pilot report …
11:29 AM Changeset [4536] by Nicklas Nordborg
References #979: Define and import Pilot report annotations Added 11 …
9:19 AM Ticket #979 (Define and import Pilot report annotations) updated by Nicklas Nordborg
Status changed
8:58 AM Ticket #980 (Remove Tophat-alignment data files from release exporter) closed by Nicklas Nordborg
fixed: (In [4535]) Fixes #980: Remove Tophat-alignment data files from …
8:58 AM Changeset [4535] by Nicklas Nordborg
Fixes #980: Remove Tophat-alignment data files from release exporter …
8:52 AM Ticket #980 (Remove Tophat-alignment data files from release exporter) updated by Nicklas Nordborg
Status changed
8:52 AM Tickets #977,​978 batch updated by Nicklas Nordborg
(In [4534]) References #977 and #978. Display alarms also on the "Lab …
8:52 AM Changeset [4534] by Nicklas Nordborg
References #977 and #978. Display alarms also on the "Lab sensor info" …

Jun 20, 2017:

1:55 PM Ticket #982 (Re-design the current pipeline) updated by Nicklas Nordborg
Description changed
1:53 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) created by Nicklas Nordborg
This is part of #982. The pilot and gene report plug-in currently …
1:50 PM Ticket #984 (Remove the raw data import step for Cufflinks data) created by Nicklas Nordborg
This is part of #982. The import is currently triggered automatically …
1:48 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) created by Nicklas Nordborg
This is part of #982. The Tophat and Cufflinks steps in the secondary …
1:36 PM Ticket #982 (Re-design the current pipeline) created by Nicklas Nordborg
The current pipeline is going to be replaced by a new and more modern …
1:27 PM Ticket #981 (Project archive need to use subfolders per site) created by Nicklas Nordborg
The main reason is that we need to be able to split the data onto …
1:21 PM Ticket #980 (Remove Tophat-alignment data files from release exporter) created by Nicklas Nordborg
We need to save disk space. Not copying BAM files will save a lot.
1:18 PM Ticket #979 (Define and import Pilot report annotations) created by Nicklas Nordborg
Scores and other values that are calculated as part of generating the …
1:05 PM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
Milestone changed
12:59 PM Changeset [4533] by Nicklas Nordborg
Preparing for future release Relax 1.1
12:58 PM PluginDownload edited by Nicklas Nordborg
Released Relax 1.0 (diff)
12:55 PM Milestone Relax v1.0 completed
See Relax extension page for more information.
12:54 PM relax-1.0.tar.gz attached to net.sf.basedb.relax by Nicklas Nordborg
Relax 1.0
12:54 PM net.sf.basedb.relax created by Nicklas Nordborg
Released Relax 1.0
11:54 AM Changeset [4532] by Nicklas Nordborg
Tagging Relax 1.0
11:53 AM Changeset [4531] by Nicklas Nordborg
Preparing to release Relax 1.0
11:48 AM Changeset [4530] by Nicklas Nordborg
Preparing for future release Reggie 4.11
11:46 AM Milestone Reggie v4.10 completed
See Reggie extension page for more information.
11:45 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.10 (diff)
11:44 AM net.sf.basedb.reggie edited by Nicklas Nordborg
(diff)
11:43 AM reggie-4.10.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.10
11:43 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.10 (diff)
11:39 AM Changeset [4529] by Nicklas Nordborg
Tagging Reggie 4.10
11:38 AM Changeset [4528] by Nicklas Nordborg
Preparing to release Reggie 4.10
11:34 AM Ticket #940 (Release importer) closed by Nicklas Nordborg
fixed
11:34 AM Ticket #938 (Release exporter should export files that can be imported on a ...) closed by Nicklas Nordborg
fixed
11:22 AM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
Description changed
8:29 AM Ticket #978 (Re-design the Lab sensor alarms page) updated by Nicklas Nordborg
(In [4527]) References #978: Re-design the Lab sensor alarms page
8:29 AM Changeset [4527] by Nicklas Nordborg
References #978: Re-design the Lab sensor alarms page

Jun 19, 2017:

1:48 PM Ticket #978 (Re-design the Lab sensor alarms page) created by Nicklas Nordborg
Make similar changes to this page as made in #977 to the Lab sensor …
8:45 AM Ticket #977 (Re-design the Lab-sensor info page) updated by Nicklas Nordborg
(In [4526]) References #977: Re-design the Lab-sensor info page …
8:45 AM Changeset [4526] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Changed the daily …

Jun 15, 2017:

2:05 PM Ticket #977 (Re-design the Lab-sensor info page) updated by Nicklas Nordborg
(In [4525]) References #977: Re-design the Lab-sensor info page Added …
2:05 PM Changeset [4525] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Added a link for …
9:49 AM Ticket #977 (Re-design the Lab-sensor info page) updated by Nicklas Nordborg
(In [4524]) References #977: Re-design the Lab-sensor info page …
9:49 AM Changeset [4524] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Sensor …
8:20 AM Ticket #977 (Re-design the Lab-sensor info page) created by Nicklas Nordborg
This could be a table that displays information about the configured …

Jun 13, 2017:

11:39 AM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
(In [4523]) References #969: Changes to Frozen tissue date import …
11:39 AM Changeset [4523] by Nicklas Nordborg
References #969: Changes to Frozen tissue date import wizard Removed …
9:35 AM Ticket #975 (Clean up unused javascript code) closed by Nicklas Nordborg
fixed: (In [4522]) Fixes #975: Clean up unused javascript code
9:35 AM Changeset [4522] by Nicklas Nordborg
Fixes #975: Clean up unused javascript code
8:57 AM Ticket #976 (Running 'ant update-version' doesn't update the version number in labenv.js) closed by Nicklas Nordborg
fixed: (In [4521]) Fixes #976: Running 'ant update-version' doesn't update …
8:57 AM Changeset [4521] by Nicklas Nordborg
Fixes #976: Running 'ant update-version' doesn't update the version …
8:56 AM Ticket #976 (Running 'ant update-version' doesn't update the version number in labenv.js) created by Nicklas Nordborg
8:53 AM Ticket #974 (A project should not be required) closed by Nicklas Nordborg
fixed: (In [4520]) Fixes #974: A project should not be required
8:53 AM Changeset [4520] by Nicklas Nordborg
Fixes #974: A project should not be required
8:52 AM Ticket #974 (A project should not be required) updated by Nicklas Nordborg
Owner, Component changed
8:52 AM Ticket #975 (Clean up unused javascript code) created by Nicklas Nordborg
The labenv.js file is full of code that was copied from Reggie. Much …
8:50 AM Ticket #974 (A project should not be required) created by Nicklas Nordborg
If going to a LabEnv wizard without an active project an error …
8:47 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) updated by Nicklas Nordborg
Milestone changed
8:45 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) updated by Nicklas Nordborg
(In [4519]) References #973: Update to Hibernate 5.2 and BASE 3.12 …
8:45 AM Changeset [4519] by Nicklas Nordborg
References #973: Update to Hibernate 5.2 and BASE 3.12 Changed to …
8:34 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) updated by Nicklas Nordborg
Summary changed

Jun 12, 2017:

10:27 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) created by Nicklas Nordborg
LabEnv doesn't work with Hibernate 5.2. It seems like nothing is …

Jun 7, 2017:

8:35 AM Ticket #938 (Release exporter should export files that can be imported on a ...) updated by Nicklas Nordborg
(In [4518]) References #938. Fixed echo commands in scripts so that …
8:35 AM Changeset [4518] by Nicklas Nordborg
References #938. Fixed echo commands in scripts so that variables …

Jun 2, 2017:

1:37 PM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) closed by Nicklas Nordborg
fixed
1:12 PM Ticket #969 (Changes to Frozen tissue date import wizard) closed by Nicklas Nordborg
fixed

Jun 1, 2017:

2:32 PM Ticket #972 (Fix problems with bad URLs) closed by Nicklas Nordborg
fixed: (In [4517]) Fixes #972: Fix problems with bad URLs Found the problem …
2:32 PM Changeset [4517] by Nicklas Nordborg
Fixes #972: Fix problems with bad URLs Found the problem in the …
10:59 AM Ticket #972 (Fix problems with bad URLs) created by Nicklas Nordborg
See http://base.thep.lu.se/ticket/2089
9:21 AM Ticket #970 (Specimen tube registration: Limit the value in "Number of tubes" to a ...) closed by Nicklas Nordborg
fixed: (In [4516]) Fixes #970: Specimen tube registration: Limit the value in …
9:21 AM Changeset [4516] by Nicklas Nordborg
Fixes #970: Specimen tube registration: Limit the value in "Number of …
8:53 AM Ticket #939 (Installation wizard for Relax server) closed by Nicklas Nordborg
fixed
8:52 AM Ticket #939 (Installation wizard for Relax server) updated by Nicklas Nordborg
(In [4515]) References #939: Installation wizard for Relax server …
8:52 AM Changeset [4515] by Nicklas Nordborg
References #939: Installation wizard for Relax server Added a raw …
8:38 AM Ticket #939 (Installation wizard for Relax server) updated by Nicklas Nordborg
Description changed
8:33 AM Ticket #939 (Installation wizard for Relax server) updated by Nicklas Nordborg
(In [4514]) References #939: Installation wizard for Relax server …
8:33 AM Changeset [4514] by Nicklas Nordborg
References #939: Installation wizard for Relax server Checking that …
8:29 AM Ticket #971 (Storage box creation wizard) created by Nicklas Nordborg
We should implement a wizard that can be used to create new storage …
8:19 AM Ticket #970 (Specimen tube registration: Limit the value in "Number of tubes" to a ...) created by Nicklas Nordborg
If someone accidentally puts in a very high number here it will cause …

May 31, 2017:

12:49 PM Ticket #938 (Release exporter should export files that can be imported on a ...) updated by Nicklas Nordborg
(In [4513]) References #938. Added support for re-naming annotation …
12:49 PM Changeset [4513] by Nicklas Nordborg
References #938. Added support for re-naming annotation types that are …
9:50 AM Changeset [4512] by Nicklas Nordborg
Merge changes in 4.9-stable branch made after Reggie 4.9.4 to the …
9:46 AM Tickets #968,​969 batch updated by Nicklas Nordborg
Milestone changed
Moving to Reggie 4.10 since it will be released soon.
9:35 AM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
(In [4511]) References #969: Changes to Frozen tissue date import …
9:35 AM Changeset [4511] by Nicklas Nordborg
References #969: Changes to Frozen tissue date import wizard Added …
9:20 AM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
(In [4510]) References #969: Changes to Frozen tissue date import …
9:20 AM Changeset [4510] by Nicklas Nordborg
References #969: Changes to Frozen tissue date import wizard The …

May 29, 2017:

2:00 PM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
Milestone, Status changed
1:59 PM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) updated by Nicklas Nordborg
(In [4509]) References #968: Keep LiasonComment in some cases when …
1:59 PM Changeset [4509] by Nicklas Nordborg
References #968: Keep LiasonComment in some cases when destructing …
8:49 AM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
Description changed
8:46 AM xls2tsv.png attached to Ticket #969 by Nicklas Nordborg
8:46 AM Ticket #969 (Changes to Frozen tissue date import wizard) created by Nicklas Nordborg
* The import should work with the complete TAB-separated file. The …
8:22 AM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) updated by Nicklas Nordborg
Description changed
Note: See TracTimeline for information about the timeline view.